| Id Trinity | TRINITY_DN51864_c1_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_447362 |
| Sequence | TCCCCTCCCTCTCCTCACCTTTTCACCAAAAATAAGAAAAAAATAAAAAATAAAAAAACAATAATTTCTCCAAAGTTTCTGTTTTTTTTTTCGTTTCTCG TATCTAAACTACCGTACTCCGTATCCATCGTCTATCTAGGTTTTCTGTTTCTTTAATCGTTCTCAATAACAAGGGGAGAGGGAAGAGAAAAAAAACAGAA AAAGTAAAATCTCAAAAAAAATAAAATAGGAATTTAGAAATATCATTTTTACTATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATGCAAGGTGGTCC AAACGGTGCTGCCAATGGTGCGAACCAGTTCGTGCCAACATCGCTTTACGTCGGAGATCTTGACCCGAGCGTCACCGATTCACAGCTCTATGACCTGTTC AACCAGTTGGGTCAGGTCGTCTCTGTTAGGGTTTGTAGGGACTTAACCACTGGGAGATCCCTTGGTTACGGTTACGTTAATTACAGCAATCCCCAAGATG GTTAGTTTTTTCCTTTCTCTTATTGAGAACTGGGTCTAATGAAAGTTTTAATCTTGTTTATACATGAATAATTTTCAGTGCATGGATGTTAGTCTATGTT TTTTACTATAATTTCATTTATAAGTCGCGGTTAAATCATGCTGTTTTTGTGTGTGTTAATTCATTGGTGAGAGATTCAAGCCTAGCTATTAGTTTTTGTG TACTGTTTTGCTATGGTGAAACTGAAACACTAGAAACAACTGAAGGTTGATTTAATGACATGTTTACTATATGATGATGTTGATATGTTCATAATGCTTG TTATTTTAATTGGGCTTTTATTGCTGCTCATCAAGCAAGTCTGTTATTGATGTTGGTAAATTGTTCTGATATGTTTTATTTATAAATGTTTGTGCTTGCT GCAAATAGGTGTACACGGGGAAATGTACATTGTGAATTGAATTTTTAGTTCACCGTAAAAGACGAAAACTTTGCATGTTTTTTCCCTTGGATAAGCAAAA TGTTGCATGCTTTTCCCTTTGGTTAATGAAACTCTGCATGCTGTTTTCAAAGCAATGCTTTTCGTCAATTGTTTTGATGTTTGATTCTCCGGAGAGGGAT AGCGTGTGGATTTTTTACTGCCTTTTATGTAATATGAATTTTTTAGGAAAGATATACCTTTTTCTATGTTTGGTAGAGCTTCCTTTTTCTTCTTATTTTT GTATTATGAGTTTTTTTATAATCTAAGCTTGTTTGCATAACTAGCTTATATTTATAAAGAAGCTTTTTACAAAGCTTCAAATAGGATGGGTTGTTTTTCC AGATTATAATCACAGATAAGTATAATCATAATCTAATTTCTCTGGCTATACCAAAAACTTGCTTGAACTACTGGATGAGTTAATGTAAACTTGGCATTTT TCATTTGCGGGAGGAAGGCTTATTTGGAAGAGTGAGCTGTAGTAGCTTATGCTATAAATGCAGTATCTTATGGTAGCAACTAGCAACAAATCTTGATGAA TGATGTAGGGTAATTGCGGGGTTGCCATGTTCTTCAGTTGGTGGGTTTTTACCAATAATGAGAAATTGAGGCTACTTTTGTAGTTAAAGTTAACTAAATC CAGCATTGCAAATTCTGCTTACCAGAATGTCCTGGATGGTGTATGGCAGGAAACCTGAACCAACACTGAGCATGCTTAACTTTATTCCAAATGTGTGCCA TTTTGCTTATGGAATTTGCAGTCTAAGCCTGGTTGTGGACTTGTGGTTCTTGGTCGAGTTCCAAACTATGAAGTAATCAGGTTTTCTGCTGTCAAGGAGC TAAGATCACATCATTTCATATAATATAATGTGAAATTATTGGCTAGATATCAGTTAGTTACCCTTAAAAAGGAACCAAAACTGACATATACATCCCCATG AATTCCTTAGTCCTTTAATGCTACATGGTTTGCCACAGGAACTAATATACATTGCATTTCGAACTTAAGCAGGATATGAAGTTCATTATTAAAATATTTT CAGGGATGATTTGTGTTCGTCATTGTGATCCATCTGATATTTATTGACTTCATACATTATAAGGCGTGGTTTGAAGAGTTATAACTATGTCGTGAAAACT TCGTTTAATGTGATTCTTACTAATCTAATTAGTTTTTGTACTCATTGATCTGGTCTTCACTTATGGTTTCTACACGTGAGTAATAGACTGATAGTTTAAT AGTTTTATGATGTTTTTGTAGATTTTTATCTATGTTTGGTTCCCTCTTTTTTACTTGCTGTTAGTAAGATACTCGCTACATGTTTACAGCTGCCAGATCA TTGGATGTCTTGAATTTCACTCCTCTCAATAACAAGCCCATCCGCATCATGTATTCTCACCGAGATCCTAGTGTTCGTAAAAGTGGAGCAGGAAATATTT TTATCAAGAATTTGGACAGGGCAATTGACCACAAGGCATTACATGATACATTCTCTTCATTTGGGAGCATCCTTTCTTGCAAGGTGGCTACAGATTCATC TGGTAACTCAAAAGGCTATGGCTTTGTACAATTTGATAATGCAGAATCTGCCCAAAAAGCCATTGAGAAGCTGAATGGTATGCTGCTGAATGATAAACAA GTTTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAAGGTTCAGCTGACAAGGCAAAATTCAACAATGTTTTTGTAAAGAATCTGTCTGAATCAACCA CTGATGATGAACTAAAGAAGGTCTTTAGTGAATTTGGACCAATTACCAGTGCTGTAGTGATGAGGGATGGAGATGGGAAATCAAGGTGCTTTGGATTTGT AAACTTTGAGAATACGGATGATGCTGCTCGGTCTGTTGAGGCTCTGAATGGCAAGAAGTTTGATGACAAAGAGTGGTATGTTGGCAAAGCTCAAAAGAAA TCTGAACGGGAGCATGAATTGAAACTTAAATTTGAGCAGAGCATGAAGGAAGCCGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTAGATG ATAGCATTGGTGATGAAAAATTTAAGGAGCTGTTCTCCTCTTTCGGTACCATTACCTCTTGCAAGGTTATGAGAGACCCCAATGGCATAAGTCGAGGATC AGGATTTGTTGCATTCTCAACCCCTGAGGAGGCATCTAGAGCTCTCTTGGATATGAATGGCAAAATGGTGGTAAGCAAACCTCTATATGTGACTCTGGCC CAAAGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAATTTTCCCAAATGCGCCCTGTTACAATTGCACCCTCTGTTGCTCCTCGTGTGCCAATGTATC CACCTGGTGGTCCAGGTATTGGTCAACAGATATTTTATGGTCAAGGGCCTCCTGCTATGATTCCTTCCCAGCCTGGATTTGGGTATCAGCAGCAACTTGT GCCTGGTATGAGGCCTGGTGGGGCTCCCATGCCAAATTTCTTTATGCCAATGGTTCAGCAGGGACAACAGGGGCAGCGTCCCGGTGGAAGACGTGCAGGT GGGGTCCAGCAGTCCCAGCAGCCAGGTCCTCTTATACCACAGCGGATGCTGCCTCGGGGACCTGTGTATCGTTATCCTCCCCCGGGTAGGGGCATTCCTG AAGTTGGTGGAGGCCTGTTTTCTGTTCCATATGATGTGAATGGAGTGCCGATCCGTGATGCAGGACTCTCCCAGCAAATTCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_188138; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_447362
| Blastp | Polyadenylate-binding protein 2 from Arabidopsis with 71.61% of identity |
|---|---|
| Blastx | Polyadenylate-binding protein 2 from Arabidopsis with 77.12% of identity |
| Eggnog | poly(A) binding protein, cytoplasmic(ENOG410XR5X) |
| Kegg | Link to kegg annotations (AT4G34110) |
| CantataDB | Link to cantataDB annotations (CNT0002568) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019421446.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |