| Id Trinity | TRINITY_DN51871_c3_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_445845 |
| Sequence | TAAAGATGGAGATTTATGCTTGCTATGGCAAGAAGATGCAACATCTTTGTAGTGCTTCATGTCAAAATATAAAGCAACTAACCAAATCAATTTTTTTCCT AGGTGCGTGCTTTTGCCGCTTCATCCTCCGTAGTGCAAACCCACTGTGGGTTCAGCTTTTCTATTTCATCTCTCTTTCATTTTTTGGCTTTGGTGTTCTC AAGGTTCTAAAGCCTAGAACATCTTTTACTCCTACAACTTTAGATTTGTTCTTCACCTCCGTTTCTGCCACTACAGTTTCTAGCATGGCCACGGTTGAAA TGGAGGTTTTTTCTAACCCCCAACTTATAGTTATGACCATTTTGATGTTCATAGGTGGTGAGGTTTTTACCTCTATGATAGGGATCCATTTTATTAGGTC CAAGTTCAAAACTGAGTTGGATAAAATAGCTTCTTCACATAGCCGTCTTAGTACTCCAAACCAACCCATTATTCTTGATCAAATTGAGTTAGAAATAGTC ACAAAATCTAGTCCAGATAATTCCAAACTTGAGGAATTTTATGAGTCTTATTTGGGTTCTACAGATAAAAACTTGAGGTATTTATCTATGAAATATTTGT TTTTTGTAATTCTAGGTTACCTTGTAGTTATCCATGTTATAGGGGTCATAGGGGTGTCCCTTTACCTTGTTGTTATTCCTAGTGCTAAAGAAGTACTAAA GAACAAGGGTCTAAAAATGTTTACATTTTCTGTTTTTACTATAGTTTCAACTTTTTCAAATTGTGGCTTTGTTCCAACAAACGAAAATATGGTTGTTTTT AGCAAGAATTCAGGTCTCTTACTTATGCTTATTCCTCAAATCCTTCTAGGGAATACACTGTACCCTTCATCCTTGAGATTTATTATATGGGTTTTGGGTA AATTTTACAAGAAAAAAGAGTGTAAGTACCTTTTGAAGAATACAGAAGAGGTTGGGTACAAACACTTGCTTCCAAGACAACACTCTATGTTTTTGGTAGC AACTGTTATTGGGATTGTTGTGGTTCAAGTAGTGTTGTTTTGTTCAATGGATTGGAATTCAGAAGCATTGATGGGACTGAATAGATATCAGAAATTGATT GGAATAGTGTTCCAATGTGTGAATACAAGGCATACAGGAGAAACCATTGTGGACCTTTCAATTATATCACATGCCATCTTGGTATTATTTGCAGTTATGA TGTTAGTCTCTATTTCTCACACTCTTCGTATTATATTATCTGCATATTTACAAATTCAACACCAACATCTTAAACCGACAATTTTTTAAAATATAAATAT TAGTATATTAGTATTTTTGCACATGCTTTAAAATGATCAATGGTTTATTGGTTATATAAGAAGAGGTGTGAATAAAATGTAAGTGATATGATAATATTAC AATATTACTTTGAAACAGTAAATCTTTAACAATAAAATGAGGCAAGCATTCTTGTTTTCTATACATTTTCCACTATAATGTTTCAAGTAGAAGCCATGCA GTATAATAAAAAAAATAAATTGGTACTTGTATAATATTTTTATATGCCACACTCATATTAATTGTGCAAAATACTTATAAGAAAAAGCTAGCAAAACATT TTATTTTGTTTTATTAGGTCATATTTCAGTATTTCACACACTTTCCTAGTTCTAGCTTGTATTTTTAAGGAGGGTGTGAGAACTGAACGATATTAGCAGT ACCCTTGCACGTTTCAACATTTAAGAATTGCATTATTATTACTGTTGTGTTGCTGTATCTTGTTGACGAAAAAAATGATAATTGTGTTTTATATATATAT ATATATCTTACATT BLAST |
| Tissue | pods |
| Gene name | LI_gene_188184; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_445845
| Blastp | Sodium transporter HKT1 from Arabidopsis with 47.76% of identity |
|---|---|
| Blastx | Probable cation transporter HKT6 from Oryza sativa with 48.04% of identity |
| Eggnog | Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA (By similarity)(COG0168) |
| Kegg | Link to kegg annotations (AT4G10310) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019457352.1) |
| Pfam | Cation transport protein (PF02386.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |