Ll_transcript_398067

• Id Trinity: TRINITY_DN51900_c6_g3_i1
• Name Transcript: Ll_transcript_398067
• Sequence: GTTTCATAATAATATGGGTAGCACATAGAAAACAATGTACATAAAAGCCATATTCCCCAAAATTATTACAAAGTTCTCCATCATCTAAAAAGCAAAAGTC CCAAGCACATGATCCCATAATGGAAGAAACAACAGCAACAATCATGGCTGCACTCTCCACCCTCAAATCTTCCCATCTCTCAGATCTCACAAACACCATC CTCTCAGCCACCCACCACCACCACCACCGCCTCTCCTTCCTCCTCTCTTCCCCTACCCTTTTTTCTTCAACCCTTCATCATCTCCACAAACTCTCCCTCC GTCAAAAGACCCTCCTCATTGCCCGCCACCTCCTCTCCTCCCTCCACCACCTCACCCGCCACCTCATATCATCATCGCCACCGCCTTTGTCTACTGCCAT GAGACAACGTCAGACTGATGCTGTTTTACTCCTCCTCCTGTTCTGTGACACACAGAAACACAACCCTGAAGCCTTGGATGCACCCTATTCAGAGTGGAGG GTGAACATGTGCAAGCTCTACTCTCATAATCTCTTGAACCTTTCTTGTTCTTCAATCATACCCTTTGGGACATGTTTTGGAACAATCTTGATCCCTTATA TTGAGATGGTGGCACGGTGCTGGAGTATGGTGGAGGCACTGGGTTGTGGTGGTGGTGGTGGTGGTGGGAAGGAAGTGGGGGAGGTGGCGGCATCAGTGGC GACAGTAGTCGCTCTTCCGACGGTGGAGGTGGTGGCTGGTGGTAAAGAATGCGTGATATGCAAAGAGGAGATGATAATAGGGAGGGATGTATGTGAGTTG CCATGTCAACATTTGTTTCATTGGAGTTGCATATTGCCTTGGTTTGGGAAGAAGAACACGTGTCCTTGCTGCAGGTTCAGGCTACCGTCCGATGATGTCT TCGGAGAGATCCAACGGCTGTGGGAAGTCTTAGTTAAAATGGGTGGGAAAGAATACTTAGGAGGATGATTCTTAACCTTTATTAATATTTTATTGTATTA ACTGCCTTTAATCATAATAGTTCATGATTTAACTAGAATCACTATTTAGAACAATCAATGATTGAAACTGCATACTACATTACCTGCTGTTGTTGCCGCA AAATTACAGTTGTGAGAATTGTTGCCACGGTATCATATCGTAATTGTAGTGTGATTCGAAACGCAATGATGCAACCGTATCAGGCCACAATATAACCGTA TCAGACTACAAAATAGTTCACATTGCAACAACTGTAATTCGTATCGCAAGTGCTGCAATGACCGCAATTACAGTAATCACAATAATTATTACAATCATGA CTACAACCGCAATTTAAAACATTGATCAAGTTCGGGACTTATGATCTTGTGATGAGGAGAAGATAGTGTAGCTTCTTTGATGGTGGACTTGGATGGCTTG CATGTGTTTGTCTGGTTTTACGCCTAAGAGAGGGGCTCGTGTGGTTGAGGTTAGGATTTGTGTGGCCAAATGAATGGACGGATAAGTGTGGGGTTTTAAA TCTTGTATGTAGACTCGTATAGATGTCAATCATATGATAGATACAATCAATAAATTCCAAGGGAAATTAATTACAATACCTTTCACACTGTTTTCCTCGA GTTGGCGATTGACTAGAATTAATTGTTAAGTTTCTGTTAGCCTCATGATTCTTGTCAATGATATTGTATTCCTTCTGACTCAAAACAAATTTTGATTGAA TTTCCATTTACATTTTCCTTTATGCAGCA
• Tissue: pods
• Gene name: LI_gene_188435;
• Additional information: details;

Expression of Ll_transcript_398067

FPKM

• PAB: 10
• PNAB: 5.5
• PS1: 1.9
• PS2: 1.3
• PS3: 1.7
• PW1: 9.9
• PW2: 28.1
• PW3: 40.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_398067

• Blastp: E3 ubiquitin-protein ligase SGR9, amyloplastic from Arabidopsis with 50.71% of identity
• Blastx: E3 ubiquitin-protein ligase SGR9, amyloplastic from Arabidopsis with 48.57% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (AT5G02750)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019443031.1)
• Pfam: Ring finger domain (PF13639.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;