Ll_transcript_398534

• Id Trinity: TRINITY_DN51901_c2_g1_i13
• Name Transcript: Ll_transcript_398534
• Sequence: AAAAAACCGGTCCATTCATTTCGAGTCACACAGACACTGAGTTATGAAATTTCCTTCTCCGTTTCAAATTCAATTTCCTTTTTCTTCTTCTTCTTCTTCT TATAATCTTCAATTTCATTTCTATCCCCAAAACTTTCCTCTTTCAATTTACCTTCCTTTTTAAAATACCAACTTAGGGTTTTATTTCTCATATCTCACTC TCTTTCCTCTTTCCTTCATCTTCCATGTCTTCGTCAATTCGTTCCCACATCCTTCTCAACCTGCTACCTGCAATTTTCGATTTTCGTTTTTGAGTTGAAA TTAGGGTTTCGGAACTTTTTTGGTTGAAGAGTAAGAAAGGGTGAAGATATGTTTTACTCTCAGTTTATATTGGCCAAAAAAGGGCCGCTTGGGACAATAT GGATAGCTGCTCATTTAGAGAGGAAGCTCAGGAAGAATCAGGTGGCTGATACCGATATCGGCATCTCTGTTGATTCCATTCTTTTTCCTGACGTACCAAT CGCACTCCGTTTGTCCAGCCATCTTCTGCTTGGTGTGGTGAGAATTTATTCTAGAAAGGTGAATTACCTTTTTGATGACTGCAGTGAGGCTTTGCTTAAG GTAAAGCAGGCTTTTCGCTCCGCTGCAGTTGATTTGCCACCTGAAGAGTCTACTGCTCCTTACCATTCCATCACCTTACCAGAGACTTTTGATCTTGATG ATTTTGAACTACCAGATAATGAGCTATTTCAAGGTAACTATGTTGATCACCATGTCAGTACTAGGGAGCAGATTACACTGCAAGATACCATGGACGGTGT GGTCTACAATAGTTCACAGTTTGGATTGGACGAGCGCTTTGGTGATGGTGATGCATCTCAAATTGGTTTAGACCTTGATGAGGTTCTGTTAACAGACAAA GCTGCTACTCTGGAGCATGATGACTGTAGTGCCGGTCCTCAAAAAGATGAAATGAAAGAGGAGATTGATGAGTTTGCCACTGCTGCTGACGCCGGTGAAT GTGCTCAAGGTCCATCTACTCCTGGACTAGAAGAGCCAAACTTGTTTGGTACTCAGGTGGATCAGGTCAATAATGAAGTTTATGATAATAATTCAACAGA TTTGGTATCACTGAAGAGCAGGCAAGAAGTTTACCCTGCTCAGCAAAGGGATGAAGATGTTATTGATAGCTCTTTGGAAAATAACGTGCTGCCTGTCAGT GTGGATATAAGTCATGAAGATGATGGCTGCCTTCCAGTTGAATTGGATAGAAATAGAGAGCAACAGGAGCATTTGGAATGTATAATTGTGACAAATGATC AAGATAGTCTTATGCCTAATGATCATTGTTCAACATTATCACCCTTGATAGTCAATTCCAATCAAGAATGTGCAAGTGGGATGATCAGTTCTTCTGGTAT GCCCGAGAAGATGGGAGACTTATATGATGGAGCTTTGATGAACAATGAGCCACTTGTGACTCCTTTGGACCAAACAATTACGAATTGTGTTGTTACTGGA GGAGTTAACGTAAATGAGACCGGTTCATCTCCTAGTTGTTCTCATGTTACATCTGATCAAGAAAATATTTCTTGTAAAAATTTGTCAAAGATGGATGGAT CACGAGAGCCTGAATCAGGTGGTCATTTGGAGGATGATCACACATTGCCGAAGCATGAAATTCTGAATGCCATTGAAATGTCTATCAATGAGGGGCAGTC CTGTCTGATTGATGAGGCTCAAGTATCTAATGTTAGAAGTCCTCGAGGATCAGCTGGTGAACCTCAAGTTGTTGATGGGGAGGCTCAGACCTCTCAACAA CTGATGGAAACAGAGTCTTCAAACCATATTCTTCATGCAGATGTGCAGCCCATCGAGTCACACCTTCGGCCATGCACCTCCCAGCTGAGCTACCATTCTT TGTCAACTGTTGATGGTGAAAACTGTGTTGCAACTGATGGCGCAGATCCTGCTATAGGTCATCATGAGACCATAGGGCCATTTGTATGTGAAGGAGTCTC AGATTTGAGGAAGTCAGATGTGCAAATTGAGAGTCAGATATTTTGTGATGGAGTGGAAAGTATAAGCAAATCTGCTGCTTCTGACATGCCAGAGCCTGAA AAAATGCTTTCCGTAGCATATCAAAATGATTGTGAAACAAATAGTCATTTGCCAATGGAGTCTACTCCTAACAACCAGGTTGTATCTGATGGTCATACAG GTGCTGCAGGAGTAAGTTCCATTTCAGGTAAAAAGCGTAGTTTCACAGAAAGTACTCTTACAGTGCATAGTGTGGATTTCGTTCAATCGTATGGTGGGAC TCAATCCAAGAGAACCAGAGAGTCCATTCCAGATGATGATGATTTATTGTCTTCCATTTTAGCTGGTAGAAGATCTTCAGTTTTGAAATTGAAACCCAGT CCGGTTGCCCCTGAAACAGTATCAATGAAATACTCTCGTTCTGCACCGCGCATTTCTGCCTTAAAGAGGAAGGTGCTCATGGATGATATGATGGTCTTGC ATGGCGATACAATACGCCAACAGTTGACAAATACTGAAGATATACGTCGCATACGGAAAAAAGCTCCTTGCACTCAGCATGAAATTTTAATGATTCAAAG ACAATCTGCGGAGGATGAGATTTTTCATGAATCAATATTTACAGGTCTGTCTGCTGCTTTGGTTATTCTGCGAAATGATTCATTTGATCTGACTGGAATC AAGATCTGCGATAATGGTTTAGATAGTTCTTTCTTGGAAAAAACAAATGATGAAGGGTCCCATTCTAGAACAAATACTGAAACTCATGTTGTGGAAAGGA ATATTGAAACTATGGCAGTCCAACTCCAAGGAGATGCAGAAGCTCAACCTACCGAGGTGCCTGTTTTGTCTGAGACTCATCAGGCAGGAGTTAACTTGGG ATCTCATGATATTGATGTTCATGGTCATTCCAATATTGTTTCTAATGTGGAAGAGCTTGGCAGTTCTCCAAACATTGAAATGAACAATGCTAGTGGAAAC GTTGACGTTTCCATTGCTGAAAAATGCTCTGTTGGCCCTGGGCTTGAATCTTCATCCCTAACGGTGTCTGAAAATAACCTTTGTGTGCCAAATGATTGTG TTGCATCGTTTCCTCTTTTGGATGAAGCAAATGATCTTGTTGGTTCTATGCATACAGATATACCAACCATGCCAACTGATCAGAATTTAAATACATTCCC TCTTGTAGAGGATGAGTTTGTGGAGAAATGTAATAGAAGTGGAATAGATGCTATTGAAGTAACTGAGCGTAGTGTTGAAATTAGAACACAATATCAAACA GATGATTTGGAAGCTAATGATTTATGTTCATCCATGGCTACTGGCTTTAAGGAAACTGATTTATATAATGATAATAAGGCTTCCTTCAACAGAGAACTGC CTTTAGAGGAAAATGTAAACAGCCTGTCAGGGGGCTTACATGAGGACCAAATTGTTGCTTCTGAGCTGGGGTCAAGGGGGTGTGATGACAAGGTCTCAAG GCATGGCCCCATATTTAGTGAAAATACTAAAGTAGCACTTATTTTGGATGAAAATGAGACTTCTCTGAATGAAGGAAATCAAGTTTGTGAGGAAGCTGGA CAACATTCTGTAGCACTTGTTCTGGATGAAAAGGAAACTTCTCTTAATGAAGAAAATCCAATTTCTGAGGAAGCTGGACAACATTCTGTAGCATTTGTTT TGGATGAAAAGGAGACTGTTCAGAATGAAAGAAATTCAGTCTGTGAGGAAGCTGGATTACAGAGTACATTGTCCCCTGAGATCCCAGCTGTTGAGAGTCC TTTGGTAGATCGTAATGATGAAAATTTCATAGATGCTAATGACACAGGGTTTTTGAATGTTGGTGATGATGAGATGATTGAAGATGATGATGATGATTTT ATGCCAAGTGCTGAAGGATCTCACCTTGAAAATAGTGGATGGTCTTCCCGGACCAGGGCTGTTGCCAAGTATCTGCAAATTTCGTTTGAGAAGGAAGATC TACATGGAAGGCAGAACCTGTGCCTTGACAATATATTAGCTGGTAAAACACGTAAGGAAGCATCAAGGATGTTTTTTGAAACACTGGTTCTCAAGACAAA GGATTATGTTCATGTTGAACAAACAAAACCCTTTTCCAGTATTAACATAAAACCAAGAATGAAGCTGATGAAATCAGATTTCTGAAACCTCATGTTGCAG TGTAGTTTTCTAGTTATGGCTTCTTATTTATTATATTTTTTGGAGTAGAATGAAGTCATTTACTTGGTGAAAGGGCTTGCCTAGTGAGGTTGAAGTGGCT GTGTCACCCTATTGATTGTAGTAAGAATATGGTAATGTATTTATGTATGTGTGTGTAACACTTTCCCATTTGTAACTTATAGGCTCTAATTTGCATCTTG TTTTAACCAAAGTATGATATTCTGTCACCCCTGGGCATTTAGTAATAATGGAGAATTGGCACTGTAATTTAGTCTTTGTTGAACTAAGTCAATCATTTAT GTACTTATTTATTCTGTTTGTCTAGTATCTAAATGAGTATTCAGGTCCACTTTCAGGTCATTTTGTATTCTGTTGAGCAATGAAACAATGCCATATACAA TATTTATAATCACCATAAT
• Tissue: pods
• Gene name: LI_gene_188442;
• Additional information: details;

Expression of Ll_transcript_398534

FPKM

• PAB: 4.7
• PNAB: 3.8
• PS1: 6.7
• PS2: 3.9
• PS3: 5.7
• PW1: 5.5
• PW2: 3
• PW3: 3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_398534

• Blastp: Sister chromatid cohesion 1 protein 4 from Arabidopsis with 73.83% of identity
• Blastx: Sister chromatid cohesion 1 protein 4 from Arabidopsis with 73.83% of identity
• Eggnog: Doublestrandbreak repair protein rad21(ENOG410XRB4)
• Kegg: Link to kegg annotations (AT5G16270)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019443833.1)
• Pfam: N terminus of Rad21 / Rec8 like protein (PF04825.12)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;