Ll_transcript_398521

• Id Trinity: TRINITY_DN51901_c2_g1_i2
• Name Transcript: Ll_transcript_398521
• Sequence: CATATTTTTCGCGTTACGGACACTCGACTTAGACACCAAATTTTCCATCTCCGTTTCAAACTCAATTCAACTACTGCATCATTCACAATTCTTCTTATTC TTCACTTCAACTGTGAAATTATAAATCTCGATTTCAATTCCATTTCCAAAAACTTGTTTCTCACACTTACCTTCATAATTTGACACCCATAGTTTTATTT CGCATCTCACTTTTTTCGAACATTGATTTCTTCAATGGTTTTCCTTCGCTTCATTAATCTTCCATGTTTTTACACTGTTATGTAACAGGAAGATGAAATT TCACGCATCGTTCTCAAGCTGGTAGGTGCAATTTTGGAATTTCGTTGTTTGAGGTGAAATTAGGGTTTCGTATGTGAAGTTGAACTATATATAAGGGAAT TCATCAAAAGCTGTGTTTGAATGTGAATTGAAGTTTAGGGGACTTGGTTTTAGCTCATTAGGTTTGAAGAAATTAGAAAGTTTCGTGGGTGAAGTAAAGT GAAGAGTAAGAGATGTTTTACTCTCAGTTTATATTGGCCAAGAAAGGGCCACTTGGGACTATATGGATAGCTGCACATTTGGAGAGGAAGCTCCGGAAGA ATCAAGTGGCGGATACCGATATCGGCGTCTCTGTTGATTCCATTCTTTTTCCTGACATGCCAATCGCACTCCGTTTGTCCAGCCATCTTCTGCTTGGTGT TGTGAGGATTTATTCAAGAAAGGTGAATTACCTTTTTGATGACTGCAGTGAGGCATTGCTTAAGGTAAAGCAAGCTTTTCGCTCCACCACAGTTGATTTG CCACCTGAAGAGTCTACTGCTCCTTACCATTCCATCACCTTACCAGAGACTTTTGATCTTGATGATTTTGAACTGCCAGATAATGACATATTTCAAGGTA ACTATGTTGATCACCATGTCAGTACTAGGGAGCAGATTACACTGCAAGATACTATGGACGGTGTGGTTTACACTAGCTCACAGTTTGGATTGGATGAGCG CTTTGGTGATGGTGACGCATCTCAAATAGGTTTAGACCTTGATGAGGTCCTGTTAACAGGCAAAGCTGCTACTATGGAGCATGATGACTTAAGTGCCAGT CCTCAATTCTCTTATCAAAAAGATGAAATGAAAGAGGAGATTGACGATCTTCCTACTGCTGCTGACGCCGGTGAATGTGCTCAAGGTCCATCTACTCCTG GACTAGAAGAGCCAGACTTGTTTGGTACTCAGGTAGATCAGGTCAATAATGAAATTGACGATCATAATTCAGCAGATTTGGTATCAGTGAAGAGCATGCA AGAAGTTTCCCCTGCTCAACAAAGGGATGGAGATGCTAATGTGCAGCCTGTTGGTGTGGATTTACATCATGAGGATGATGACTGCCTTCCAGTTGAATTG GATAGAAAAAGAGAGCAAAAGGAGTATTTGGCATGTATGGTTGTGACAACAGATCAAGGTAGTCTGATACCTAATGATCATTGTTCAACATCATCACCTT TGACAATCTCCTCCAATATAGAGTGCCCAACCACCCTAATACCAGAATGTGCAGGTGGGATGATCAATGCTTCTGGTATACCTGAGAAGATGGAAGACTC CAATGGCTTAGTTTTGATGAACAATGAACAACTTCCTTCGGACCAAACTATTACAAATTGTGTTGTTACTGGAGGAGTTAACATAAATGAAACTGCTGTA TCTCTTAGTTGTTCCCATGTTATATCTGATCAAGAGAACATCTCTTGTAAACATTTGTCAAACATGGATGGATCCCGAGGGCCAGAATCAGATGCTCATA TGGAGGATGATCACACATCGCCAAAGCATGAAGTTCTAAATGCCATAGAAGTGTCTCACAATGAGGGGCTATCCTGCTCGATTGATGAGGCTCAAGTATC TAATGTTATTAGTCCTCAAGGATCAGTTGGTGAACCTCAAGTTGTTGATGAGGAAGTTCAGGTCTCTGAAGAACTGATAGAAACAGAGTCTTCAAACCAT ATTTCTCATGAAGTTGTGCAGCCCACCGTATCACAGCTTCAGCCATGTACCTCCCAGCTGAGCCGTCCTTCTTTGTCATCTGTTGAAGCTTATGGTGCAG ATCCTGCTATAGGTCATCATGAGATCATAGAGCCATTTGTTTGTGAAGGAAACCCAGAGTCGGGGACATCAGATGTTCAAATTGAGAGTCAGATATTTTG CGATAAAGTGGAAATTATAAGTAAATCTGCTGCTTCTGATATACCAGAGCCTGAAAAAATGCTTTCCCTAGCATATCAACATGATGGTGAAACAAATAAT AATCTGCCAATGGAGTCTACTCCTAACAATCAGGGTGTATCAGATGATCATACAGATCCTACAGGAGTAAAATGCATATCAGGTAACAAGCGCAGTTTCA CAGAAAGTACTCTTACAATGCAGAGTGTGGATTTCATTGAATCATATGGTGGGACTCAATCCAAGAGAACCAGAGAGTCCATTCCTGATGATGATGATCT GTTGTCTTCCATATTAGATGGTAGAAGATCTTCAGTTTTAAAATTGAAACCCAGTCCGGTAGCCCCTGAAATAGTATCAATGAAACGCCCTCGTTCTGCA CCACGCACTTCTGCCTTAAAGAGGAAGGTGCTCATGGATGATATGATGGTCTTGCATGGCGATACAATACGCCAACAGCTGACAGATACTGAAGATATAC GTCGCATACGGAAAAAAGCTCCTTGCACTCGCCATGAAATTTTTATGATTCAAAGACAATCTGCGGAGGATGAGATTTTCCATGAACCAATATTTACATG TCTGTCTGCTGATTTGACTATTCTGCGAAATGTTTCATTTGATCTGACTGGAATCAAGGTTTGTGATAATGGTTTAGATACTTCTTTCTTGGGAAAAACA AATGACAAGGAGTCCCATTCCAGAACAAATACTGAAACTCATGGAGTGGAAACGAATATTGAAACTAAGGCACTCCAACTCCAAGGAGATGCAGAAGCTC AACCTATTGGGATACCTGTTTTTTCTGAGTCCCATCAGTCAGAAGCTAACTTGGAATCTCATGATCTTGATGTTCATGGGCATGCAAATATTGTTTCTCA TGTGGGAGAGCTTGACAATTCTCAAAACGTTGAAATGAACAATGCTGGCAGAAATATCGATGTTTCTGTTGCAGAAAATTTTTCTGTTGGCCCTGGGCTT GAATCTTCATCCCTAACAGTGTCTGAAAGTAACCATTGTGTGCCAAATGATTGTGTTGCATCCGTGCCTGTCATGGATAAAACGAATGTTCTCGTTGGTT CTATGCATACAGATATACCAAGCATGTCAACTGACCAGAATTTGAATACATCAGCTATTCTAGAGGATGAGTTTGTGGAGGAGAAATGTAATAAAAGTGA AGTAGATACTATTGAAATAACTGAGCACAGTGTGGAAATTAGAACACAAGTTCAAACAGATGGTTTGGAAGCTAACAATTTATGTGCATCCATGGTTACG GGCTTCAAGGAAACTAATGAATATAATGATAACAGGGCTTCCTTCAATGGAGACCTGCCTTTAGAGGATAACGGAAACAGCATGCCAAGGGGCTTAAGTG AGGATCAAAGTGTTGCTTCTGACTTCGGGTCAATGGGGTGTGATGGCAAGGACTCAAGGTCTGGCCCCATATTTAGTGAGAACACTAAAGTAGATTGTTT AGACACTGTAGTAACTGTTTTGGATGAAAAGGAAACTTCTCTGAATGAAGGAAATCCAGTTTGTGAGGAAGCAGGACAACATTCTGTAGCTCTGGGTTTG GATGAAAAGGAGACTATTCTGAATGAAGGAAATCCAGTCTGTGTGGAAGCTGGACTAGAAAGTACATCATTGTTCCCTGAAATCCCTGCTATCGAGAGTC CTTTTGTAGATCGTAATGATGAAAATGTCATACATGCTAATGATTATGATACAGGGTTTTTGAATGTTGGTGATGATGAGATAATTGAAGATGATGATTT TATGCCATGTGCTGAAGAATCTAGCCTTGAAAATAGTGGATGGTCTTCCCGGACCAGGGCTGTTGCCAAGTATCTGCAGATTTCGTTTGAGAAGGAAGAT CTCCATGGAAGGCAGAACCTATGCCTTGACAATATTTTAGCTGGTAAAACACGTAAGGAAGCATCAAGGATGTTTTTTGAAACACTGGTTCTCAAGACAA AGGATTATGTTCATGTTGAACAAACAAAACCCTTTTCCAGTATTAACATAAAACCGCGAATGAAGCTGATGAAGTCAGATTTCTGAAACCTCATATTGGA ATCGCTGACGTAGCTGTAAAGATCGATACTGCTGTAGTGTGGTTGGAATCTGCAGGGTTGAGATAATCTTTTCAACATTTCTCCACTATTTTAGTTATGA GTAGAATTAAGTTATTTAGTTCATTAAGGGGCTGGCCTGGTTGGAAAGTAAGTAGTGTATCATCCTATTGATTGTAGTAAGAATATGGTAAAACGTATAT ATATATATTTTTATATATCTGTAAAATATCAACATTTGTATTATGTTTAAACGAATACGTCTAAGCAAACATGATATTCTGCCACCCCTAGGCATTAAAT ATAATGAAGAAAGTGACTTTGTTAAAA
• Tissue: pods
• Gene name: LI_gene_188442;
• Additional information: details;

Expression of Ll_transcript_398521

FPKM

• PAB: 3.2
• PNAB: 4.2
• PS1: 5.7
• PS2: 3.7
• PS3: 4.9
• PW1: 5.1
• PW2: 3.5
• PW3: 3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_398521

• Blastp: Sister chromatid cohesion 1 protein 4 from Arabidopsis with 72.66% of identity
• Blastx: Sister chromatid cohesion 1 protein 4 from Arabidopsis with 72.66% of identity
• Eggnog: Doublestrandbreak repair protein rad21(ENOG410XRB4)
• Kegg: Link to kegg annotations (AT5G16270)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019449918.1)
• Pfam: N terminus of Rad21 / Rec8 like protein (PF04825.12)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;