| Id Trinity | TRINITY_DN51931_c1_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_397160 |
| Sequence | AATATCCCTGGTTTGGTATCTAATTTTAACTACCATCTTACTTGATGCTTTAATTCATGGACCATTGGAATTTGAGTTTGATCGTAAAACCTTATATAGA AGCGTTTGAATCTTATATTCCTAACTGTTTGCAGAGAACGCAGCAGCAGCAACATGGAGGATCCAGACGGGACATTAGCAAGTGTTGCCCAATGCATTGA GCAGCTGCGTCAGAGCTCATCTTCTGTGCAAGAGAAAGAGCATTCATTGAAGAAGTTATTGGAGCTTATTGATATGCGTGAAAATGCTTTCAGTGCCGTT GGATCTCACTCTCAGGCAGTTCCAGTACTTGTGTCCCTTCTCCGGTCAGGGTCATTGAATGTGAAGATACAAGCAGCAACTGTATTGGGCTCCCTTTGTA AAGAAAATGAGCTAAGGGTGAAAGTATTACTTGGAGGATGCATTCCTCCATTGCTTGGTCTGCTCAAGTCAAGTTCAGCTGAAGGTCAAGTTGCTGCTGC GAAGACTATATTTGCTGTGACTCAAGGTGGTGCCAGAGACCATGTTGGATCAAAAATCTTTTCAACTGAAGGAGTTGTGCCGGTGCTCTGGCAGCAGCTG CAAAAGGGCCTCAAGAATGGAAATGTAGTTGATAGTTTATTGACTGGAGCGTTGAAAAATCTCTCCAGCAGTACTGAAGGGTTCTGGAATGCCACAGTAC AAGCTGGAGGAGTGGACATACTAGTGAAGTTACTGACAACGGGACAGTCTAGTACTTTAGCTAACGTGTGCTTTTTACTTGCCTGTATGATGATGGAGGA TGCATCTGTGTGTTCAAAGGTGTTGGCAGCAGAGGCAACAAAACAACTCCTCAAACTTTTAGGCCAAGGTAATGATGCCCCTGTTAGAGCTGAAGCAGCT GGTGCTCTTAAATCTCTCTCTGCCCAGAGCAAAGATGCAAGGCGGGAGATATCAAATTCTAATGGCATTCCTGCTTTGATCAGTGCTACCATAGCTCCTT CCAAGGAGTTCATGCAAGGTGAATATGCTCAAGCATTACAGGAGAATGCTATGTGTGCTCTAGCAAACATCTCTGGTGGTTTATCTTCTGTCATCTCCAG CCTTGGTCAAAGCCTTGAATCATGCACCTCACCTACCCAAAGTGCTGACACCTTAGGGGCTTTAGCTTCAGCTCTTATGATATATGATGACAAGGCAGAA TCTACTAAGGCATCAGATCCGTTGGTAGTTGAGCAGACTTTACTAAAGCAATTTAAACCTCATGTACCCTTCCTTGTCCAGGAACGAACCATTGAAGCCC TAGCTAGTTTGTACAGCAACCCCATGCTCTCTATTAAGCTTGAAAGTTCTGATGCAAAGCGTTTGCTTGTTGGTCTAATAACAATGGCGTCCAATGAAGT GCAAGAGGAGCTTCTAAAAGCTCTCTTGACACTGTGCAATGGTGAAGGCAGTCTGTGGCGCACACTTCAAGGCCGTGAAGGAGTTCAGCTGCTGATATCT CTCTTGGGACTTTCATCAGAGCACCAGCAAGAATGTGCTGTTTCCCTCCTTTGCCTTCTATCTAATGAAAATGATGAAAGCAAATGGGCCATTACAGCTG CTGGTGGTATACCTCCACTTGTTCAAATCTTGGAGTCAGGATCAGTTAAAGCAAAGGAAGATTCAGCAACAATCCTTAGGAACCTATGCAATCACAGTGA GGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGTTGTGGCTTTTGAAAAATGGAAGCTCTAATGGGAAGGATATTGCAGCGAAGACC TTACATCATTTAATTCATAAATCTGATACTACGACTATCAGTCAGCTTACAGCATTATTGACTAGTGATCTACCTGAATCTAAGGTTTATGTTTTGGATG CTTTAAGAAGTATGCTTTCTGTTGCTCCTCTTAGTGACATTCTGCGTGAAGGTAGTGCTTCCGGTGATGCATTTGATACCATGATAGCATTATTGAGCTC TACCAAGGAAGAAATTCAGGCAAAGTCTGCATCAGCTCTAGCAGAAATTTTCAAAATGAGAAAAGATGTTCGTGAAAGCAGCATTGCTGTTAAAACACTT TTGTCAGCCATCAAATTGCTTAACGCTGAATCTGAAAGTATCTTAGTGGAGTCCTCACACTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGG ATGTAGCTGGTGTGGCCAGAGATGCACTATCCCCACTTGTTGCACTAGCTAACACTTCAGTTTTGGAAGTTGCAGAGATGGCAACATGGGCTGTGGCTAA TCTTATTTTGGATAGTGGAACTGCGGAGAAAGTTGTTACTGAAGAAATTATCTTGCCTGCTACCAGAGTATTATGTGAAGGCACAATTTCTGGTAAAACC CATGCTGCTGCAGCAATTGCTCGCCTCTTACATTCTCGCAAAGTTGATGATGCTGTAACTGATTGTGTAAATCGTGCTGGAACTGTTCTCGCATTAGTTT CCTTCTTAGATTCTGCTATTAATGAATCTGTGTCCACATCACAAGCTCTAGAAGCACTTGCCATTTTATCCAGGCCAGAAGAGACCAGTGCAAATATTAA ACCTGCATGTGCAGTTTTGGCTGAAGTCCCTGAAAGCATATGTCCGATAGTCCTGTCAATTGTTCATTCGACACCCCTGTTTCAGGATAAAGCTATTGAG ATATTATCCCAATTATGCAAGGACCAGCCTGTTATTTTAGGAGATACTGTTGCTACCGCCTCTGGGTGTATAACTTCAATAGCTAACAGGATAGTTAGTT CCACAAATGTAAAGGTCAAAATTGGGGGAGCTGCACTTCTTATTTGTGCTTCAAAGGCAAATCATCAGAGTCTATTTGAGGATCTCAATTTATCAACCTT ATGCACTAGTCTTATTCAGGCTCTAGTTGATGTGCTTATTTCTGCACTGTCTTCTTCGGGCAATGAGGGTGATGACAGCAAGGAACTCATCAGCATATGC AGGCATACAAAAGAAGATGCCAACAGTGGTGAATCCAACACTGGCACTACCATTATATGTGGTCCCAACTTAGCTATATGGTTACTGTCTATTCTTGCTT GTCATGATGAGAAAAACAGAACTGCAATAATGGAGGCTGGAGCAGTTGATGTTCTTACAGATAGGATCTCAAATTGTGCCTCACAATATTATCAGATTGA TAACAAAGAAGATGGCAGCAAGTGGATTTGTTCTTTGTTGTTAGCCATACTATTTCAAGATAGAGATATCATACGAGCACATGCAACCATGAAATCTGTA CCAGCACTTGCCAATTTGTCGAGGTCAGAGGAATTGGCAGACAAATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGTAGGGGAACAC TTTTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGGCTTATATCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAAATGTCAGAGGAATT TTCTTTGGTCCGATATCCTGATCAAGTTTCTCTGGAGAGGTTGTTTAGAGTTGATGATATAAGAGTCGGTGCCACTTCTCGGAAGGCAATACCTGCCCTA GTTGATCTTCTCAAACCGATTCCAGATCGCCCAGGAGCACCATTTTTAGCACTTGGGCTTTTGATTCAGCTTGCTAGAGATTGCCCATCGAATAAGATTA TAATGGTAGAGTCTGGGGCCTTAGAGGCCCTTACAAAGTATCTTTCACTGAGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTGTTAGGAATTCT TTTTAGTAGTGCGGACATAAGGAAGCATGAGTCAGCATTTGGTGTTGTTGCTCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGCTGCAAGGTATAGT GCTACTAAAGCCTTGGAAAGTTTATTCTCTGCTGACCACATTAAAAATGCAGAGACTGCTCGACAAGCGGTTCAGCCCTTGGTGGAGATACTCAATACTG GTTCAGAGAAGGAGCAGCATGCTGCAATTGCTGCATTGGTTAGGTTGCTGAGTGAAAACCCATCAAGAGCACTTGCTGTTGCAGATTTTGAGATGAATGC GGTGGATGTTCTTTGCAGGATCCTTTCATCTGATTGTTCAATGGACCTCAAAGCGGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAATACAAGGATT CGGTCCACGATGGCTGCTGCACGCTGTGTTGAACCTCTAGTCTCTCTCCTTGTAACTGAGTCTAGTCCTGCTCAGCATTCAGTCGTTCGTGCATTGGATA GGCTTGTTGAAGATGAGCAACTGGCGGAATTAGTTGCTGCACATGGTGCAGTTGTTCCTCTTGTTGGCCTACTGTATGGTAGGAACTATATACTTCATGA GGCTGTTTCCAGAGCTTTGGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACGCATTA CATGAAGCACCTGATTTTCTATGTGCAGCTTTCGCAGAATTACTGCGTATATTGACCAATAATGCTACCATAGCTAAAGGACCATCTGCTGCTAAAGTGG TTGAACCCGTGTTTTTGTTCCTGACAAGACAAGAAGTTGGACCTGATGGACAACATAGTGCACTGCAGGTTTTGGTTAATATCTTAGAACAACCACAGTG TCGTGCTGACCATAGATTGACTTCTCACCAAGTTATTGAACCACTTATCCCCTTACTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTT CTTTCACATCTACTTCTAGAAGAACACCTTCAGAAGGATCCAGTAACACAGCAGGTAATCAGTCCTCTTATACAATGTCTTGGTTCTGGTATACACATAT TGCAGCAGAGAGCTGTAAAGGCCCTAGTTAGTATTGCACTAACTTGGCCAAATGAAATTGCTAAAGAGGGTGGTGTTATTGAAATTTCAAAAGTGATATT GCAAGCTGATCCTTACCTTCCTCACGCGTTATGGGAGTCTGCTGCATCTGTTTTGTCAAGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTGCCT GTTGCTGTTTTAGTAAGGCTGCTTCGATCTGGATCAGATGGCACTGTTCTTGGTGCTTTAAATGCTCTTCTAGTGTTGGAAAGCGATGATGGAACTAGTG CAGTAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTGGAGCTCTTAAGATCTCATCAGTGTGAGGAAACTGCTGCAAGACTCCTAGAAGTACTGTT GAACAATATAAAGATCCGAGAAACAAAAGCTACCAAGTCAGCTATCTTACCATTATCTCAGTACCTTTTGGATCCACAAACCCAAGCACAGCAGGCAAGG TTATTGGCAATTTTGGCTCTTGGGGACCTGTTACAGAATGAGAGTCTTGCTCGAACAGCTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTG AAGACCAACCAACAGAAGAAATAAAAGTTGTAGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGAGCAAACAAAAGAGCTGTTGCAGAAGCTGG CGGTGTTCAAGTTATATTGGATCTGATAGGTTCAAGTGAACCAGAAACATCTGTTCAGGCTGCAATGTTTGTTAAACTTCTCTTCTCAAATAATACTATT CAAGAGTATGCTTCCAGTGAGACAGTCCGATCGATAACTGCCGCTATTGAAAAAGATTTATGGGCTAGTGGTACTGTGAATGAAGAGTATCTGAAAGCTT TAAATTCTCTATTTAGCAACTTCCCACGACTGAGAGCAACTGAACCAGCAACACTTAGCATTCCCCATCTGGTTACATCCTTGAAATCAGGCTCTGAGGG TTGTCAGGAAGCTGCCTTGGATGCACTTTTTCTGCTCAGACAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCAAAAGCTCAGTCAGTAGCAGCTGCAGAT GCTATTCCATTTCTGCAGTACTTAATCCAGTCTGGCCCACCTCGGTTTCAGGAGAAGGCAGAATTTCTGTTACAGTGTTTGCCAGGGACATTGGTGGTGA TCATCAAGCGTGGTAACAATATGAAGCAATCCGTCGGAAACCCGAGTGTTTACTGTAAGCTTACACTTGGCAACACTCCACCAAGGCAAACCAAGTTGCT TTTGTCTGTGTCTGCACTAGGGTTAGCTAATATGGGTGTCAAAAGGTGAGGTTTTGTTTTGCCAATTATGCTCAAGTTTGACCTATGAAAGCTGTTTCTT GAATGGCATAATATTATCTGTTTTTTTCCTAATGGAAGTCATGCGAATACAAATATTCAATTAGGGTATGCATTTTGATTTGGCTCTGCTGCATATGTAG ACTTCAAGAATAGAGATTCACTCACCCGGATTTATTTTTTCTTTCCCTCTATCTTTGACATGAGGGTAAGTCTCTATTCAACAGTAAGATTTCTGCTTAG GTCAGGAGTTCAAATCCTTGAAAACAATTTCTTCACGTGTGGGATAAGACTGTGCACTACCCTCCCATATGGGCATACCCCACTAGGTGGGAGTCTCTGA CTCTCAGTGCACCAGGCTGCCCTTTTTTCCTTTATCTTTGACTTAATTGGTAATTTTTTTCAGTCCCTTTTTCAGTAGCCATAATATGATTTTGCATGGC AAGTAACATTATGTTGTGACAAATAGGTATAAAACTTGATTGTTGGTTTTTTGTCCCGATGTTACTTTATTTAGTAATACATATCTTTTGCCATATACTA TTTTCTTTTGAAAATCAAATATATTGCATTACTAATATCCATGGCGATGTGCTAATCAGGTGGTCTCAACCGGCCCTAATCCGGAGTGGGATGAGAGCTT TTCATGGTC BLAST |
| Tissue | pods |
| Gene name | LI_gene_188690; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_397160
| Blastp | Protein CELLULOSE SYNTHASE INTERACTIVE 1 from Arabidopsis with 79.46% of identity |
|---|---|
| Blastx | Protein CELLULOSE SYNTHASE INTERACTIVE 1 from Arabidopsis with 79.33% of identity |
| Eggnog | ARM(ENOG410ZTP2) |
| Kegg | Link to kegg annotations (AT2G22125) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019459406.1) |
| Pfam | Armadillo/beta-catenin-like repeat (PF00514.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |