Ll_transcript_397162

• Id Trinity: TRINITY_DN51931_c1_g1_i14
• Name Transcript: Ll_transcript_397162
• Sequence: AATATCCCTGGTTTGGTATCTAATTTTAACTACCATCTTACTTGATGCTTTAATTCATGGACCATTGGAATTTGAGTTTGATCGTAAAACCTTATATAGA AGCGTTTGAATCTTATATTCCTAACTGTTTGCAGAGAACGCAGCAGCAGCAACATGGAGGATCCAGACGGGACATTAGCAAGTGTTGCCCAATGCATTGA GCAGCTGCGTCAGAGCTCATCTTCTGTGCAAGAGAAAGAGCATTCATTGAAGAAGTTATTGGAGCTTATTGATATGCGTGAAAATGCTTTCAGTGCCGTT GGATCTCACTCTCAGGCAGTTCCAGTACTTGTGTCCCTTCTCCGGTCAGGGTCATTGAATGTGAAGATACAAGCAGCAACTGTATTGGGCTCCCTTTGTA AAGAAAATGAGCTAAGGGTGAAAGTATTACTTGGAGGATGCATTCCTCCATTGCTTGGTCTGCTCAAGTCAAGTTCAGCTGAAGGTCAAGTTGCTGCTGC GAAGACTATATTTGCTGTGACTCAAGGTGGTGCCAGAGACCATGTTGGATCAAAAATCTTTTCAACTGAAGGAGTTGTGCCGGTGCTCTGGCAGCAGCTG CAAAAGGGCCTCAAGAATGGAAATGTAGTTGATAGTTTATTGACTGGAGCGTTGAAAAATCTCTCCAGCAGTACTGAAGGGTTCTGGAATGCCACAGTAC AAGCTGGAGGAGTGGACATACTAGTGAAGTTACTGACAACGGGACAGTCTAGTACTTTAGCTAACGTGTGCTTTTTACTTGCCTGTATGATGATGGAGGA TGCATCTGTGTGTTCAAAGGTGTTGGCAGCAGAGGCAACAAAACAACTCCTCAAACTTTTAGGCCAAGGTAATGATGCCCCTGTTAGAGCTGAAGCAGCT GGTGCTCTTAAATCTCTCTCTGCCCAGAGCAAAGATGCAAGGCGGGAGATATCAAATTCTAATGGCATTCCTGCTTTGATCAGTGCTACCATAGCTCCTT CCAAGGAGTTCATGCAAGGTGAATATGCTCAAGCATTACAGGAGAATGCTATGTGTGCTCTAGCAAACATCTCTGGTGGTTTATCTTCTGTCATCTCCAG CCTTGGTCAAAGCCTTGAATCATGCACCTCACCTACCCAAAGTGCTGACACCTTAGGGGCTTTAGCTTCAGCTCTTATGATATATGATGACAAGGCAGAA TCTACTAAGGCATCAGATCCGTTGGTAGTTGAGCAGACTTTACTAAAGCAATTTAAACCTCATGTACCCTTCCTTGTCCAGGAACGAACCATTGAAGCCC TAGCTAGTTTGTACAGCAACCCCATGCTCTCTATTAAGCTTGAAAGTTCTGATGCAAAGCGTTTGCTTGTTGGTCTAATAACAATGGCGTCCAATGAAGT GCAAGAGGAGCTTCTAAAAGCTCTCTTGACACTGTGCAATGGTGAAGGCAGTCTGTGGCGCACACTTCAAGGCCGTGAAGGAGTTCAGCTGCTGATATCT CTCTTGGGACTTTCATCAGAGCACCAGCAAGAATGTGCTGTTTCCCTCCTTTGCCTTCTATCTAATGAAAATGATGAAAGCAAATGGGCCATTACAGCTG CTGGTGGTATACCTCCACTTGTTCAAATCTTGGAGTCAGGATCAGTTAAAGCAAAGGAAGATTCAGCAACAATCCTTAGGAACCTATGCAATCACAGTGA GGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGTTGTGGCTTTTGAAAAATGGAAGCTCTAATGGGAAGGATATTGCAGCGAAGACC TTACATCATTTAATTCATAAATCTGATACTACGACTATCAGTCAGCTTACAGCATTATTGACTAGTGATCTACCTGAATCTAAGGTTTATGTTTTGGATG CTTTAAGAAGTATGCTTTCTGTTGCTCCTCTTAGTGACATTCTGCGTGAAGGTAGTGCTTCCGGTGATGCATTTGATACCATGATAGCATTATTGAGCTC TACCAAGGAAGAAATTCAGGCAAAGTCTGCATCAGCTCTAGCAGAAATTTTCAAAATGAGAAAAGATGTTCGTGAAAGCAGCATTGCTGTTAAAACACTT TTGTCAGCCATCAAATTGCTTAACGCTGAATCTGAAAGTATCTTAGTGGAGTCCTCACACTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGG ATGTAGCTGGTGTGGCCAGAGATGCACTATCCCCACTTGTTGCACTAGCTAACACTTCAGTTTTGGAAGTTGCAGAGATGGCAACATGGGCTGTGGCTAA TCTTATTTTGGATAGTGGAACTGCGGAGAAAGTTGTTACTGAAGAAATTATCTTGCCTGCTACCAGAGTATTATGTGAAGGCACAATTTCTGGTAAAACC CATGCTGCTGCAGCAATTGCTCGCCTCTTACATTCTCGCAAAGTTGATGATGCTGTAACTGATTGTGTAAATCGTGCTGGAACTGTTCTCGCATTAGTTT CCTTCTTAGATTCTGCTATTAATGAATCTGTGTCCACATCACAAGCTCTAGAAGCACTTGCCATTTTATCCAGGCCAGAAGAGACCAGTGCAAATATTAA ACCTGCATGTGCAGTTTTGGCTGAAGTCCCTGAAAGCATATGTCCGATAGTCCTGTCAATTGTTCATTCGACACCCCTGTTTCAGGATAAAGCTATTGAG ATATTATCCCAATTATGCAAGGACCAGCCTGTTATTTTAGGAGATACTGTTGCTACCGCCTCTGGGTGTATAACTTCAATAGCTAACAGGATAGTTAGTT CCACAAATGTAAAGGTCAAAATTGGGGGAGCTGCACTTCTTATTTGTGCTTCAAAGGCAAATCATCAGAGTCTATTTGAGGATCTCAATTTATCAACCTT ATGCACTAGTCTTATTCAGGCTCTAGTTGATGTGCTTATTTCTGCACTGTCTTCTTCGGGCAATGAGGGTGATGACAGCAAGGAACTCATCAGCATATGC AGGCATACAAAAGAAGATGCCAACAGTGGTGAATCCAACACTGGCACTACCATTATATGTGGTCCCAACTTAGCTATATGGTTACTGTCTATTCTTGCTT GTCATGATGAGAAAAACAGAACTGCAATAATGGAGGCTGGAGCAGTTGATGTTCTTACAGATAGGATCTCAAATTGTGCCTCACAATATTATCAGATTGA TAACAAAGAAGATGGCAGCAAGTGGATTTGTTCTTTGTTGTTAGCCATACTATTTCAAGATAGAGATATCATACGAGCACATGCAACCATGAAATCTGTA CCAGCACTTGCCAATTTGTCGAGGTCAGAGGAATTGGCAGACAAATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGTAGGGGAACAC TTTTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGGCTTATATCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAAATGTCAGAGGAATT TTCTTTGGTCCGATATCCTGATCAAGTTTCTCTGGAGAGGTTGTTTAGAGTTGATGATATAAGAGTCGGTGCCACTTCTCGGAAGGCAATACCTGCCCTA GTTGATCTTCTCAAACCGATTCCAGATCGCCCAGGAGCACCATTTTTAGCACTTGGGCTTTTGATTCAGCTTGCTAGAGATTGCCCATCGAATAAGATTA TAATGGTAGAGTCTGGGGCCTTAGAGGCCCTTACAAAGTATCTTTCACTGAGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTGTTAGGAATTCT TTTTAGTAGTGCGGACATAAGGAAGCATGAGTCAGCATTTGGTGTTGTTGCTCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGCTGCAAGGTATAGT GCTACTAAAGCCTTGGAAAGTTTATTCTCTGCTGACCACATTAAAAATGCAGAGACTGCTCGACAAGCGGTTCAGCCCTTGGTGGAGATACTCAATACTG GTTCAGAGAAGGAGCAGCATGCTGCAATTGCTGCATTGGTTAGGTTGCTGAGTGAAAACCCATCAAGAGCACTTGCTGTTGCAGATTTTGAGATGAATGC GGTGGATGTTCTTTGCAGGATCCTTTCATCTGATTGTTCAATGGACCTCAAAGCGGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAATACAAGGATT CGGTCCACGATGGCTGCTGCACGCTGTGTTGAACCTCTAGTCTCTCTCCTTGTAACTGAGTCTAGTCCTGCTCAGCATTCAGTCGTTCGTGCATTGGATA GGCTTGTTGAAGATGAGCAACTGGCGGAATTAGTTGCTGCACATGGTGCAGTTGTTCCTCTTGTTGGCCTACTGTATGGTAGGAACTATATACTTCATGA GGCTGTTTCCAGAGCTTTGGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACGCATTA CATGAAGCACCTGATTTTCTATGTGCAGCTTTCGCAGAATTACTGCGTATATTGACCAATAATGCTACCATAGCTAAAGGACCATCTGCTGCTAAAGTGG TTGAACCCGTGTTTTTGTTCCTGACAAGACAAGAAGTTGGACCTGATGGACAACATAGTGCACTGCAGGTTTTGGTTAATATCTTAGAACAACCACAGTG TCGTGCTGACCATAGATTGACTTCTCACCAAGTTATTGAACCACTTATCCCCTTACTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTT CTTTCACATCTACTTCTAGAAGAACACCTTCAGAAGGATCCAGTAACACAGCAGGTAATCAGTCCTCTTATACAATGTCTTGGTTCTGGTATACACATAT TGCAGCAGAGAGCTGTAAAGGCCCTAGTTAGTATTGCACTAACTTGGCCAAATGAAATTGCTAAAGAGGGTGGTGTTATTGAAATTTCAAAAGTGATATT GCAAGCTGATCCTTACCTTCCTCACGCGTTATGGGAGTCTGCTGCATCTGTTTTGTCAAGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTGCCT GTTGCTGTTTTAGTAAGGCTGCTTCGATCTGGATCAGATGGCACTGTTCTTGGTGCTTTAAATGCTCTTCTAGTGTTGGAAAGCGATGATGGAACTAGTG CAGTAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTGGAGCTCTTAAGATCTCATCAGTGTGAGGAAACTGCTGCAAGACTCCTAGAAGTACTGTT GAACAATATAAAGATCCGAGAAACAAAAGCTACCAAGTCAGCTATCTTACCATTATCTCAGTACCTTTTGGATCCACAAACCCAAGCACAGCAGGCAAGG TTATTGGCAATTTTGGCTCTTGGGGACCTGTTACAGAATGAGAGTCTTGCTCGAACAGCTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTG AAGACCAACCAACAGAAGAAATAAAAGTTGTAGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGAGCAAACAAAAGAGCTGTTGCAGAAGCTGG CGGTGTTCAAGTTATATTGGATCTGATAGGTTCAAGTGAACCAGAAACATCTGTTCAGGCTGCAATGTTTGTTAAACTTCTCTTCTCAAATAATACTATT CAAGAGTATGCTTCCAGTGAGACAGTCCGATCGATAACTGCCGCTATTGAAAAAGATTTATGGGCTAGTGGTACTGTGAATGAAGAGTATCTGAAAGCTT TAAATTCTCTATTTAGCAACTTCCCACGACTGAGAGCAACTGAACCAGCAACACTTAGCATTCCCCATCTGGTTACATCCTTGAAATCAGGCTCTGAGGG TTGTCAGGAAGCTGCCTTGGATGCACTTTTTCTGCTCAGACAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCAAAAGCTCAGTCAGTAGCAGCTGCAGAT GCTATTCCATTTCTGCAGTACTTAATCCAGTCTGGCCCACCTCGGTTTCAGGAGAAGGCAGAATTTCTGTTACAGTGTTTGCCAGGGACATTGGTGGTGA TCATCAAGCGTGGTAACAATATGAAGCAATCCGTCGGAAACCCGAGTGTTTACTGTAAGCTTACACTTGGCAACACTCCACCAAGGCAAACCAAGGTGGT CTCAACCGGCCCTAATCCGGAGTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGACAGAAGCTTAACATTTCATGCAAAAATAAGAGC AAAGTAGGAAAGAGTAAATTTGGGAAAGTAACAATCCAGATTGATAGAGTGGTAATGCTTGGAGCAGTAGCTGGAGAGTACACATTGTTGCCTCAAAGTA AAAGTGGTCCTCCAAGGAATCTAGAAATAGAATTCCAATGGTCTAACAAGTGATACAAGTTGCTGAGTTTGGTAACAAGTTTTCAGATTTGAACATGCTG GGAAAGAAAGTTTTGGATTTAATTTTATCATATATGTATATAGAAGGTGTTTATTAATTTTTCGTCTATAGTTTCAAACAGATTCTTTGTCATAATATTC TTTTGTAACACGATCCTTCATTTCCTAGGATGAACACTGGGGTACGAAGATCGGGCCTGCTTTGGGTTTCTTGTATGATTTTTTGCTTGTTATTGTTGTC AATTAAAGAGAAGAAGAGTTTTTCATGTTTTTTGTGTGCTACATGAGTATAATTCTATGGACAGTTGAAGGAAAGATTTACAAGTGATTAACTTCATTGT GTATTATTAACTTTTAAAAGTTAACAATGATTAAATATGAATATATTATTT
• Tissue: pods
• Gene name: LI_gene_188690;
• Additional information: details;

Expression of Ll_transcript_397162

FPKM

• PAB: 0.5
• PNAB: 14.2
• PS1: 4.2
• PS2: 8
• PS3: 6.8
• PW1: 8.3
• PW2: 12.8
• PW3: 12.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_397162

• Blastp: Protein CELLULOSE SYNTHASE INTERACTIVE 1 from Arabidopsis with 80.03% of identity
• Blastx: Protein CELLULOSE SYNTHASE INTERACTIVE 1 from Arabidopsis with 79.91% of identity
• Eggnog: ARM(ENOG410ZTP2)
• Kegg: Link to kegg annotations (AT2G22125)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019459406.1)
• Pfam: Armadillo/beta-catenin-like repeat (PF00514.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;