Ll_transcript_397372

• Id Trinity: TRINITY_DN51938_c0_g1_i1
• Name Transcript: Ll_transcript_397372
• Sequence: ATGCCTTGCAAGACCTCAGAAGAAAGACAAGTTCGTGATAGAAAAGCATTCCTTCTTCACAGCCTATTCGTTGACGTTGCCATTTTCAGAGCTATTAATG CTGTTAAACATGTTATGGGAGAACCAGATTTAAGCTCTCCCGTCTCAGAAAATGGGGTTCTTTATACCGAGAGAGTTGGTCACATGAGTATCAAAGTCAT GAAAGATGCTACTGTTGCAAGTTCTAAAGTTGATACTAAAATTGATGGAGTTGAAGCCACAGGAGTAAATCTAAAGGAACTAGTAGCTCGAAATCTATTG AAAGGAATTACTGCTGATGAGAACACTGCAGCCCATGATACTACCACTTTAGGTGTTATTAATGCGAGATATTGTGGTTATGTGGCTGTTGTGAAAGTTG AGAGTGGAGAAATGGACTGTCCATCTTATCAAAATACTGAATTTCTTGATCAGCTAGAGGGTGGCGCCAATGCACTCAACATTAACAGTTTGAGATTACT TCTCAACACAACACAGTCAGAGAACAATAGAACAGTGACTGAGATACAAACGCTTGAGAATGAAGAGCTTGGAGCCTCCCATGCTTTTGTGGAGAGGCTG ATTAAAGAAAGCCTTTCTAAGCTTGAGGAAGAGGAAACAGGTTTGGACAATTTCGTCAGATGGGAACTTGGAGCCTGCTGGTTACAACATTTGCAAGATC AAAACAACACTGAAAAGGACAAGAAACCATCGTTGGATAAGGCTAAAAATGAAATGAAGGTTGAGGGGCTAGGGAAACACCTAAAAGCCCTCAAGAATAA TAAAATTAAATCCGATCTAACTGACCTTAAATCGGCATCTGAAAACTCCAAACCTCCTCATGTGTGTGTTAATCGGGAGGCTGAAAGTGCTTCACTGCTT TCAGCAGAATCTCAATATGAAACTACCACAGCAGAAAATGAGCTTGTGCTGAAGGGGATGTTATCTGAAGCAGCATTTACCCGACTAAAAGAATCTGGAA CTGGACTTCACCGCAAGTCAATTCAAGATCTGATTGACTTGTCTCAGAAATATTACATTGATGTTGCTCTCCCAAAACTGGTAGCAGATTTTGGCTCATT GGAACTCTCGCCTGTTGATGGCCGCACCCTAACTGATTTTATGCATACTAGGGGTCTACGAATACGGTCTCTTGGACATGTTGTCAAGCTATCTGAAAAG CTATCACATGTGCAATCACTTTGTATTCATGAGATGATAGTTCGAGCTTTCAAGCACATCCTGCAGGCTGTGATTGCAGTTGTTGACAAGGAGAAAGTGG CTACTACAATAGCTGGTGCATTGAATTTGCTGCTTGGTGTTCCTGAAAATAGAGAATCAGATAAACCGTGCAAAACCCATCCCCTTGTGTGGAAATGGCT AGAGGTGTTTCTGAAGAAGCGATTTGATTGGGATGTTAGCAACTTGAATTACAATGATGTGAGGAAGTTTGCAATTTTACGTGGATTATGTCACAAGGTT GGCATTGAGCTTGTTCCAAGGGACATTGACATGGATTCTCGTATTCCTTTCCACAAATCTGATATAGTCAGCTTGGTCCCAGTTCACAAGCAAGCAGCAT GCTCATCTGCAGATGGAAGGCAGCTTCTAGAGTCATCAAAAACAGCTTT
• Tissue: pods
• Gene name: LI_gene_188728;
• Additional information: details;

Expression of Ll_transcript_397372

FPKM

• PAB: 0.8
• PNAB: 4.5
• PS1: 2.4
• PS2: 2.5
• PS3: 2.3
• PW1: 3
• PW2: 3.7
• PW3: 2.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_397372

• Blastp: Protein TSS from Arabidopsis with 50.09% of identity
• Blastx: Protein TSS from Arabidopsis with 50.18% of identity
• Eggnog: Involved in proper cytoplasmic distribution of mitochondria (By similarity)(ENOG410XQUQ)
• Kegg: Link to kegg annotations (AT4G28080)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019440439.1)
• Pfam: Translation initiation factor eIF3 subunit 135 (PF12807.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;