| Id Trinity | TRINITY_DN51938_c0_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_397375 |
| Sequence | ATGAGGTGAGAGGGCCACGTTTGAAGGATACGGTGGACGTGTCCGCACTGAAGCCATGCAACCTCACCTTGGTGGAAGAGGATTACGATGAACACGACGC CGTATGCCACGTCAGATGCCTCCTCGACATTATCGCCTGCACCACCAGCTTTGGCCTTTCGCCGGCGCCGGAGAAGAACGCTACCATCTCCGGAAAACTA TCTCCGGCGGATGTGGTTGACGGAGACTGTGAGATAAGTCAGCCATGTCCTAAGCTTGGAAAGTTCTACGAGTTTTTCTCTCTTTCTCATCTCACTCCAC CACTCCAATATATAAAGAAAACAGTGAGACGACAAGTTTCGGAGATATCGGAGTCTGATCATTTCTTCTCTCTTGATGTGAAACTATGTAATGGGAAAGT GGTGCATGTTGAAGCTTGGAGGAAGGGATTCTACAGTGTTGGGAAACAGAGGATTCTCAGTCATACTCTTGTAGATTTGTTGAGACAGTTTAGTCGACCG TTTGATGTTGCTTATGATAATCTTTTGAAAGCATTTTCGGAACGGAACAAGTTTGGGAATCTCCCTTATGGATTCAGAGCCAATACATGGCTTGTTCCTC CGGTTGTGGCACAATCACCGTCATTTTTTCCTCCTCTTCCCATGGAGGATGAAAACTGGGGAGGAAATGGTGGTGGTCTAGGAAGAGATGGGAAGTATGA TTTGATTTCCTGGGCCCATGAGTTTTCATTTATTGCATCTATGCCTTGCAAGACAGCAGAAGAAAGACAAGTCCGTGATAGAAAAGCATTCCTTCTTCAC AGTCTATTCGTTGATGTCGCCATTTTCAGAGCTATTAAGGCTGTTAAACATGTGATGGAAGAACCAGATTTAAACTGCTCTATCTCAGAAAGTAATATTC TTTACACCGAGACAGTTGGTCATTTGAGTATTGAAGTCACAAAAGATGCTACTGTTGCAAGTTGTAAAGTCGATACTAAAGTGGACGGAGTTAAAGCCAC AGGAGTAAATCAGAAGGATCTATTAGCTCGAAATCTATTGAAAGGAATTACTGCTGACGAGAACACTGCAGCCCATGATATTACCACTTTAGGTGTTATT AATGTGAGATATTGTGGTTATGTGGCTTATGTGAAAGTTGAGGGTGGAGAAAACGACAATTTTGACTCTTCATCTTATCAAAATACTGAATTTCTTGATC AGCTAGAGGGTGGCGCCAATGCACTCAACATTAACAGTTTGAGATTACTTCTCAACACAACACAGTCGGAAAACAGTAGACCAGTTACTGAGATACAAAC ACTTGAGAATGAAGAGCTTGGAGCCTCTCATGCTTTTGTGGAGAGTCTGATCAAAGAAAGCCTTTCTAAGCTTGAGGTTGAGGAAAGGGATTTGGACAAT TTTGTAAGATGGGAACTCGGAGCCTGCTGGTTACAACATTTGCAAGATCAAAATAACACCGAAAAAGATAAGAAACCATCTTTGGATAAGGCGAAGAGTG AAGTGAAGGTTGAGGGGCTAGGGAAACCCCTTAAACCCCTCAAGAATAGTAAAAATAAATCAGATCTAAGTAATCCTAAATCGGCATCTGAAAACTCCAA ATCTCATCATGTGTGTGTTATTGGGGAGGCTGAAAGTGCTTCATTACCTTCTGCAGAATCCCAACATGAAACTACGACAGCAGAAAATGAGCTTGTGCTC AAGAGGATTTTATCTGGGGCAGCTTTTAACCAACTAAAAGAATCTGGAACTGGACTTCACCGCAAGTCAATTCAAGATCTGATTGACTTGTCTAAGAAAT ACTACGTCGATGTTGCTCTACCAAAACTGGTAGCAGATTTTGGCTCATTGGAACTCTCTCCTGTTGATGGCCGCACCCTAACCGATTTCATGCATACTCG GGGTCTACGTATACATTCTCTTGGACATGTTGTCAAGCTATCTAAAAAGCTATCACATGTTCAATCACTTTGTATTCATGAGATGATAGTTCGAGCTTTC AAGCACATCCTGCAGGCTGTGATTGCAGTTGTTGACAAGGAGAAAGTGGTTACAGCAATAGCTGGTGCATTGAATTTGTTTCTTGGTGTTCCTGAAAATA GAGAATCAGATAAATCATGCAAAACCCATCCCGTTGTTTGGAAATGGCTAGAGGTTTTTCTGAAGAAGCGATTTGATTGGGATGTTAGCAACTTGAATTA CAATGATGTGAGGAAGTTTGCAATTTTACGTGGATTATGTCACAAGGTTGGCATTGAGCTTGTTCCAAGGGATTTTGACATGGATTCTCCGACCCCTTTC CGCAAATCTGATATTGTCAGCTTGATCCCAGTTCACAAGCAAGCAGCATGCTCATCTGCAGATGGAAGGCAGCTTCTAGAGTCATCAAAAACAGCTTTAG ACAAGGGAAAGCTTGAAGATGCAGTTACCTATGGAGCGAAGGCTCTTGCCAAGCTTGTTGCGGTTTGTGGTCCCTATCATCGAATGACAGCAGGGGCATA CAGCTTACTTGCTGTAGTTTTATACCATACTGGAGATTTTAATCAGGCAACAATTTATCAACAAAAAGCTCTGGACATCAATGAGAGAGAGTTAGGTCTG GATCATCCAGATACGATGAAGAGTTATGGGGATCTTGCAGTTTTCTATTATAGACTTCAACACACAGAGCTGGCTCTGAAGTATGTAAAGCGTGCTCTAT ATCTTCTGCATCTAACATGTGGCCCATCTCATCCAAACACGGCCGCAACATACATTAATGTGGCTATGATGGAGGAAGGTCTGGGAAATGTGCATGTTGC TCTCAGATATCTTCACAAAGCTTTAAAATGCAACAAAAGATTACTTGGCCCAGATCATATTCAGACGGCTGCAAGTTATCACGCAATAGCAATAGCACTT TCGTTGATGGAAGCATATCCTTTGAGTGTGCAGCATGAGCAAACAACCTTGCAAATTCTGCGGGCAAAACTTGGCCCAGATGACTTGCGTACTCAGGATG CTGCTGCTTGGCTTGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCACGTAATGGTACTCGAAAGCCTGATGCATCAATAGCTAGCAAAGG CCACCTAAGTGTGCCAGATCTTCTTGACTACATTAATCCTAATCATGAAGCCAAAGGAAGAGATGTGGCGGTAAAGAGAAGAAGCCAGATAACGAAGGCG AGGACAAAGTCAAGCCTGAACATTGGCTCAACAAGTTCTGATGAGTCTTTGAAAGAAACTCCGGAAAAGACTTCAGAGGAGGCGATATTCATACCTGTTC CAGGAGGCAGTGCAAATGCTGAGCAAGAGACAAACTCTGCTCCAGAGTCAGAACAGCCCGTTCTAGAAAAGACCTCAGATAAAAAGCAACAAATTTCGGG TAACTCGTCTGATGCACATGCTGATGGAGAGGATGGATGGCAACCAGTTCAACGACCAAGATCATCGAGTTCATATGGCCAGCAACGAAAGCAGAGACGG GCAACAGTTAACAAAGTTTATTACCAGAAGAAGAATGTGGAGTCGGACACAGACCATCCTTCTGTAAGGAGTACTGACCAGAATGGTAGGTATTACTTTT CGACGAAGCGAACAATATCCCGTGGGAGTTATACAGATAATCATACAGTAAATGCTGGTCAGGGCTCTAAATTTGGAAGAAAAGTGATTAAAGCTGCTAC ATACAGAGTCAAGTCTGTGTCTGTGGTTACAGACACTACTCCAAAGGATACACAAGAAATCAGTGATCAGCTTTTCAATTCTAACTCAGAAGAACTCGGT TCAAATTCATCATCAAATGATGTTAATCCAGTAAAGACTTCCACAGTTAGTCTTGGAAAATCACCTTCATACAAGGAAGTAGCATTGGCCCCTCCTAGGA CAATCTCAAAGTTGCAGGTCTGTAGTCCTCAAAGTGATATTCCTGTTAGCGATGACCTTGGTGTCGGCAAACATGAAGAGGAAGTTACTGAAGGATATGC TACCGCTAACCCAACCCTGGGAGAAGTAAACAATATATTTGAACATAAGGACAAAGATTTTTCTGAGAAGAAAGAAGAAACGCAGTTGACGGATGCTGCG CATGATAATTTTGACAGATCTGAGGGACTTGACTCTGGGGCTGTTGAGGATCATGAAACAGCTGATAATATCATAATGATTGATGCAGTGAAGGATCATG TGGATTCTCACAAACTAGAACTCAACACAAGTATATTACCTAATGATGATGCAAATATCATCTCACAAGAAGGTGAAGATTTAAGGGTGAGTATATCTCC ATCGGCTAAGAAGTTGTCTGCGTCTGCAGCTCCATTCAACCCATCACCAGGTATTGCACGTCCTGCACCAGTTGCCATGAACACAACTCTTCCCTCTGGT CCAACCATTTGTCCTTGGCCGGTAAATATGCATGTTCAGCATGGGCGTGCTACTGTGTTACCTGCAGTTACCCCAATGTGTTCCTCTCCTCACCATGCAT ACCCTTCACCTCCGCCGACACCAAACATGATACAACCATTGCAATTTATGTACCCTCCTTTTACTCAACCAATACCAACCACCAATTTTCCAGTTACTAG CAGTGCATTTCATGCCAATCATTTTGCATGGCAATGTAATATGAACCGAATGGTATCCAAGTTTCCTCCAAATGCTGTCTGGCCAGGTTGCCATCCTGTG GAATTTCCTCTTCCAGCACCTGTTGTTGAACTAATTCCTGATCCTCTTTTGCAGCCACAAGAACAGTGCAATGTTTCTCCAATTTCAGGTTCAGCATTGG TTCTTCAGGAGGACATGAATAAAGTCAGGGAATTTAAGGAAGAGGTGGAAGTTCTAGAATCAGAGACTGGCAAAGGTGAGTTCGTTAAAGTTCATCAAGA AAGCATAAAGGAAAACAGTGATACCAATTTTCATGTCTCTAAAAATGCCGGAAACATAACAAATCATGACATCAGTGTGAATGAAAGCAAAAGTGAAACG AACATGGATGGTGAGAAAACTGTCAGCATTTTGATCAGGGGAAAAAGAAACCGGAAGCATTCTTTGAGAATGCCGATAAGTTTGCTTACAAGTCCCAACA GCTCTCCGTCGTTTAAAGCTGTTTA BLAST |
| Tissue | pods |
| Gene name | LI_gene_188728; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_397375
| Blastp | Protein TSS from Arabidopsis with 46.49% of identity |
|---|---|
| Blastx | Protein TSS from Arabidopsis with 53.02% of identity |
| Eggnog | Involved in proper cytoplasmic distribution of mitochondria (By similarity)(ENOG410XQUQ) |
| Kegg | Link to kegg annotations (AT4G28080) |
| CantataDB | Link to cantataDB annotations (CNT0001002) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019418832.1) |
| Pfam | Translation initiation factor eIF3 subunit 135 (PF12807.6) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |