| Id Trinity | TRINITY_DN51944_c1_g2_i6 |
|---|---|
| Name Transcript | Ll_transcript_398765 |
| Sequence | TCTACCGAGGCCCTAATCCTGGTACTCACCATCCGCTATTGTCTCCACTTTGTAAGATTTCTTCATGTAGATTGTAACATTCAATTTAATGTCATCCTAT TTCAGCATTTTTTTACTATTTTAGATTCCAATCATGTATAGAAATTGTTAACGCTAGAAACTTGAATGCTATTCCCTTTTATGTTTCTGAAACTTCCATT TATATTGCATTTGCTGCGTTTACTTGCAATTTTAATATGTTAGAGAATAAGATTTATCCGGATAAAAAACCATATTTGAGTAAGTATCCTCTCCGGTACC GGAGAAACCAAAACAAAGGAAAAAATAACACGGGATGACACTTTTATCATTTCATATACAATGAAATAACATTTTTGCCAGTACTGGATAGGCAAATACT ACCAAAACAAAGGAAAAAATGACATGGGATGACACTTTTATCTTTTTACATGCAATGAAATAACACTTTTATCTTTTTACATACAATGAAATAACACTTT TGTCACCGAAAACAAAAAGGAAAAACAAGTATTTGCCTCTCCAGTAGTGGATAGGATCCTTGTTCACTTTTGAAGAGTATGCTCCGTCTTTGATAGCTGT TCAAAACACATGTCAGAGGGGCATACTCTTAATGTACAATTCTCATATAGGACGAAGAAATGTTAAGATGATGCCTAAATGGAAATCATTAGATTTTCCT ATCCTTGAAGATATATCTCCAATTAAACTTTCCTTGTATAGGTAATTTGATGCAATTAACCCGAGTTAAAATTAAACCATAATTAGATTTGCAAACCTAA AAGGAAGGAAAAAATATATTCATTTCATCATTTAAACATTAAAAAATCCAAAAACTTTACAGGTTGTGTTCATTGAACCTACGTGGCAGTTCACATATAT AATATTTCTCACTATATGGAAGGTTGTAATTATGCATTTTAAATATATCTTACCTTATTTTATTTGATTAATGTGTTTGAAAAAATTAAATTGGATATGT TATTAACTCATTTAAAAATAAAGTAAAACTGACAAGTGGATGAATGAGAAATAGTATAAAACTTCTCTCGCCATCTTGCCAAACATGCGCCGCCCAGAGA AGGTGTTAGCTTTTAAACTCTGATCAGATCCCAATTTCGCTTAATTCTAAATCACCCAGAAGTAAAAAGAAGCAGCTCCTTCAACTCAAATTCTTGTTTC CCCTTCATGCGTCAAGTCCTCTCTCATTGTTGATATTGCGCTGGTGTGTACTTCTAGGGAAGGCAATAAGGAGTAATTAGTGGCCATTTGGAGAAACAAA CTTGCAATCATGGAATGTAATAAAGATGATGCCTTAAAGGCTAAAGAGCTTGCAGAAGAGAAGCTTCTAAAGAAGGACTATGGTGGCGCAAGGATATCCG CAATGAGGGCTCGAGACCTGGATCCCAATCTTGCTGGCCTTCGTGAATTGCTGGCAGCCATTGAGGTGAATTTCTCTGCTGAAAGAAGAGTCAATGGGCA AGTTGATTGGTACGGGGTCCTTGGCGTGCAACCTCTGGCTGATGATGCAACAATTCGAAGATGTTACCGGAAACTGGCTCGTGTGCTGCACCCCAATAAA AATAAATCAGTAGGTGCTGCCGATGCATATAAACTAATCACACATGCATTCAGTTTATTATCTGATAAAGACATGAAAGTCATCTATGACCAAAATCGTA ATTCATGGGGCAAATATGAAGAAATTCCAGGTGGGAAACCTTCTATACCAGCTTATCAGTTTGGTTTCTGTAATAATAATATATCGAATACTCCCAACTA CAACGATAGAGATCATATGAATGGTACTCCCCCCATTCCTACTCCAGTATCTCCTGTGACATTGAAACAGACATTTTGGACCACATGTGAGTCTTGTGGG ATGGAATTTGAGTACCATAATGTTTTTATCAACTGCAAGCTTATCTGCTTCATCTGCCATCAGCCCTTTTTGGCTCTTGAGGTACTATCCCCATCTGTAT ACAAAAATGAGTCATCCACTTCAAGAACTGTTCCTATGATGGAACGAAACTTTAACTCAACTCGAATTGAAAGAAACTTTCATGCTTTAGGAAGGACCCC AATGTATGCTGTCAACTCATCACTTTGGTCAGGTCATCTCTCTACGCATGGTGGTATTTCCAGTGTGCTGGTTCCAGCTTCTTCTTCTGCTGCTGAAGCT CCTGGTGTTTATGGAATGTCTTCTGAGAATTTGAAGAGACGGTATGGCGATTCAACACCTGTCATCAGGGAGGAGGGCATTGTTGGGAAAACTCATGCTG GTGCGAGAAATGTTTCTGATTCATCTTCCAAACCCTCTTGTTTTGGTCCAAATTCTGTTTCGATAGCAGATAGCTCAAGGAAAATAAGGCGCACAGATGG AAATCAAGTACATGGTGATGGAAGAGGCATGGAAGCCAAAATTGCATGTCAAAATGGAGGAATAAGATTTGCTAATCAGTTAGTATCTCAGAATGATAAT GCTGCTGGATATTGTAAACGGAATGGTACTAAGGATGTATTACAGCAGCAATGGAGGACCATGTTGATCGAAAAGGCACGAAACTCTATTCATAAAAATC TTGGTGAATTGAAGGTCGCTTCTATACCAACAAATTCACGAAAGGAAAAGAACACTGATGCACAAATCAGAGTGAAGAAAGAGAGGGCTACAAGTGGGGT AAAACATGCTGCCCCAGAATTGGTTGAATCTGAGACTGTAGGCAATAAGTGTTTCTCTGCTGACTCAGAAGTTACTGAGTTTCTCACCATGTGTGTTGCA GACCCAGATTTCCATGATTTCGATGGGGACCGTATTGAAAACGCCTTTGGTAAGAATGAAATTTGGGCTGTCTATGATGATGATGATGGCATGCCACGCT TCTATGCTTTAATCAACTCTGTGATCTCAAAGAAACCTTTCAAAATGCGGATTAGTTGGCTTAGCTCTATGACCAATGAAGAATTGGCCCCAATTAAGTG GGTCAGTGCTGGCTTCGCCAAGACTGTTGGGGATTTACAAGTTGGCAGGCGTGATTTTTCTACCTCTCTTAATTCCTTCTCGCACAGGGTTAATTGGACA AAAGGTTCAAAAGGCCTTATACATATATATCCTAAGAAGGGGGACGTTTGGGCTCTGTATCGAAATTGGTCTGCTGAATGGAATGAATTTACCAAAGATG AAGTCGTACATAAGTATGACATGGTGGAAGTGCTTGATGACTACAGCGAGGATCAAGGTATAAATGTTGCTCCGCTTGTTAAAGTTGCAGGTTTCAAGAC AGTTTTCTGCCGGAATGCAGATCCAGGAAAGTTCTGGAATATACCAAAGGCGGAGATGTTTCGTTTCTCACACCAGGTACCTTCATACTTGCTTACTGGT CAAGAAGGTCGTAATGCTCCTAGTGGTTGTTTGGAGCTTGATCCTGCTGCTATACCCATGGAGCTTCTCAAGGCAGCCACAGAAGCTGCAGAGGAAGAAA TGACAACTGAGAAACCATTAGCAGATGAACCTAAGCTCGGCGTGAATTCCAGTGAGGATGCTGTTGAACTTGTTCCAAAAAAGGAGGTGGCTGAAGCAAT GGAGAAGAAGGAAAGCTGTCCTGAGGTTAAGTTTGTATACAAGCGAAGGCGTCCAAAGAAATGAATTTGAGCCCCATTTGAATCTAAGTTTTTATATTTT GTGATAAAAGTAGAGACTAAACTTTTCTGCATTCAGAGACCAACTATGCAGCTTTTGTTTTGCTTATGGACTAATTTCAGCGTATCTAAGCCTGTCTAGA ATACCAATTTACCTTAGATACTGCAGTTTTTATGAGTCTATAATATTATTCAGCATCATTTAGCTCATTCGATGGAGAGGATTACATTTATTATTATGGT TTAAAAGâBLAST |
| Tissue | pods |
| Gene name | LI_gene_188778; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_398765
| Blastp | DnaJ protein P58IPK homolog A from Oryza sativa with 35.43% of identity |
|---|---|
| Blastx | Curved DNA-binding protein from Pseudomonas with 42.42% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (4328607) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415359.1) |
| Pfam | DnaJ domain (PF00226.30) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |