Ll_transcript_399271

• Id Trinity: TRINITY_DN51945_c0_g1_i2
• Name Transcript: Ll_transcript_399271
• Sequence: ATTTGCATAGAAAGAAAATGTAAGTTGAAGACTGTAGAAATGAAAATCAACGCTCTCTCTTTCTCTTTCTTCGAGCCTTTGAATTTTGAATCCTAATCAT GCACATGCTCTTCCAAATACAGGTCCTGTAACTCACTTCTATACCTTCAATTCTCGTTTTGTATTTCTCTTTTTTTCTTTAAGAGTTCCCATTTGCTACA AAATTATTTAGTTTCAGCAGATTTAGGGTTTTCAAAATTTCAATCGACACTGCTCATGCGTATGGTTCAGTAGAATTAGCTTGCTGCCTCAACTTGCATT GCTGTTTTGAATCTTAAAAAAGATTTATTTACTTTGTTCATGTAATGGGTAATGTTGAAATCCCCAATTGGCTCGAAGGGTTGCCTCTGGCACCGGAATT TCGTCCTACAAAAACCGAATTCTCAGACCCAATTGCTTATATTTCGAAGATTGAGAAGGAAGCTAGTACCTTTGGGATATGTAAGATTATCCCACCATTG CCCAAACCTTCAAAAAAGTATGTTTTTTCCAATTTGAATAGGTCATTATTGAAGTGCCCTGAATTGGGCCAAGTTAACAGTTCCTTAGGTGCTTGTAATT CTTTGAAAACGGGCTATAGGGATAGTTGTAGTGATTACGAGCCGCGAGCTGTGTTTACTACTAGGCAGCAAGAACTAGGGCAGAGTATAAAAAAGGCCAA AGGGACAGGTCAGAACCCAATATCATGTGTGCAAAAGCAAGTATGGCAAAGTGGGGAGGTTTATACACTGGAACAGTTTGAGTCTAAATCAAAGACTTTC GCAAGAAGCATGCTAGGGACTGTGAAGGACGTTTCTCCACTGGATATAGAGGCTATGTTTTGGAAGGCAGCTACAGAGAAGCCTGTATATATTGAGTATG CCAACGATGTGCCTGGCTCTGCTTTTGGAGAATCAAAGGGTGAATTTTGCTACAGTCCTACGAAGCAGAGAGGAAGGACTTATTATAAGAGTAAAATAGA TACCTCTGATTGTAAACAAACTGAACTGAATAGCTTAAGAGATGCCAAAAGTAATGAGACTAAGGGTGCTTCTTCCGAGACTCACGCAGGCCCATGTTTA AAGATGTACGAATCATCTACACCCGTGTCAACATTTCCATTGAATGAAGCTTCACAATGTTCTAGTGAAAAAAGTTCTGAAGTCAGCAATGATATCCAAG GCACTTCTGGCTGGAAGCTTTCAAATAGCCCTTGGAACTTGCAGGATATTGCACACTCATCTGGATCCTTAACGCGCTTCATGCCAGATAATATTCCTGG TGTTACTTCTCCCATGGTGTACATTGGTATGCTGTTCAGTTGGTTTGCCTGGCATGTAGAGGATCATGAGCTTCATAGCATGAATTTTCTTCACACTGGA TCATCAAAGACTTGGTATTCTGTTCCCGGAGATTATGCCTTTGCTTTTGAGGAGATCATCCGCTGTCAAGCTTATGGTGATAACATTGATCACTTAGCTG CTTTGAAACTTTTGGGTGAGAAAACCACTCTTTTATCACCTGAGATAATTATTGAATCTGGGATTCCTTGTTGCAGGTTAATACAGAACCCTGGTGAATT TGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCACGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTACAATAGCT AAGGAAGCTGCAGTGCGTAGAGCTGTGATGAATTATCTTCCCATGCTCTCCCATCAGCAATTGCTTTACTTGTTGACCATGTCTTTTATTTCAAGAGTGC CAAGAACACTATTGCCCGGTGCGCGCTTTTCACGTCTAAAAGATCGTCAAAAAGAAGAAAGGGAGTTGTTAGTAAAAAAATCTTTTATAGAAGATATGCT GCAGGAAAACAAGTTGATATCCATCCTTCTTGAAAAGGAAGCAACCAAACAGGCTGTTTTATGGAATGCTGATTTACTACCAAGTTTCAGTAAACATTGT CAGTTGTCGGATTTAGCTTCTACTACTGGTAGCTCTGTAGCAGACATGTCCAATATAAGTTCTTCAGATAAAAGTAGCCATTATCTGTTTGACGAGATGA GTTTGTATATGGAGAATCAGACTGATTTATATTTTGGTGGCATCGACAACGATCTTTCATGTGACTTCCAAACTGATTCAGGACCCTTGCCTTGTGTGGG TTGTGGAGTACTTGGTTTTCCATTTATGGCTGTGGTGCAACCATCTGAGAAATTGACAGTGGAACTTTTTCCTGTTGATCATCATCTAGTTCAAGATTCC TCTCTGAACTCTACTGTCTCCCTTCATAGCTCAGTCTCAACAAAGGAATCCTCCAATATATCATTGAAGGCATTTGATAATTATTGGAATGCCTCCAGTA AATTTTTGAGACCACGGATTTTCTGCCTGGAGCATGCTGTTCAGATAGTGAATATGTTGCAGTGCAAAGGTGGAGCCAATGTGCTAATAATTTGCCATTC AGACTACCAGAAAATTAAGGCACATGCCAGTGCAGTTGCAGAAGAGATACATAGTGCTTTTGATTATAACGAGGTTCCGTTAGATATTGCATCCCCAGAA AATTTGACTCTGATTGATTTGGCAATTGATGGTCAACAACGTGATGAATACGAAGACTGGACATCTAAACTAGGCATTAACCTCCGGTATTGTGTCAACG CAAGAAATAATTCTCCATCTAAACAAGTTCCCTGGACACTAGATTTAGGGATGCTGTTCTCTGATAAACATTCTGATTTAGAATTTTTATCATTAAATTG GCAGTCACGGAGATCTCGGTCCAAAAGGTTAAATTATTCAGCTCAGACTAAAACCTCTGACAAAATTCAGAGAAAGAAGGATGGTCAGTTGGAGGGAAGA AAAGATGGTTCCACTGCCAAAAAGAAGCTAATTCATTATTCAAGAAGGAAGTTCAAATCAAAGCAAAACTGTTCCTCGGGACTGAGCATGGTCCATACAT TCCAAGAGAAGTCCACAAATGTGTCAGCTGTCTTGAGTGGAGAACACTACGATTGTGTTTCTAAATGTGAGCTTGACACTGGCAATTTCAGGAGTGAATG TGCATTGTCAGGCGTGTGTGCTTCTACTGCAAGGTCTCCAATGCATCAGGAAATGTCTACAAAGAATCTGGATGATGAGGTGCATAAAGAATATCAGTCT ACCTGCAAAAGCAACAATGAGGAAGCTACTTTATCTACTGTTTCATTGGTAAATGAACCTATGCTTGCTTCTATGGATGAAAGTTTTGAAAGTCCAAACA ACAATTATGCTGTTGAAAAAGTTAGCGATGGAATTTCATTAAAGGAGACAACTGGGCAAGAAATTAATTCTTTGAGTGAGAGGGAAAAGGAACCTCTCGG TGATGATAAACCAATAAGTGAATATACTCCAAACAGAGACGTTTGTGAAGTTCCAAGACAGCCTTTTGCTGCTCCAGACTTGAATGATACTTTTATAGAT GCTGAGAGGCAGTGCCAAGCCCAAAATAAGAGTAAACTTAATGGGGAGCCTGTTTCTAGTTATGTTGCAAAAGGTGAAAATACAAGTGTAACTTTGTCAG AATTAGGATGTTCTGAAGTAATAATGGAAACATGTCCTGAAGAAGACATATGTATTCAATTTATTTCAGATAAAGGAAGGAAACTGGAAATCCAACCAAC TGATAGAAGTGATGAGGAAATTTGCTCTGGTACTAAGACACCGTTAAAGGACTCTTCCATATCAATCCAGGAATGTTCTAAAAACGAGAAAGAGATGTGT GTAGGACAAAATATAAATGGAAGTGAAGTTCATTTGTTGCAAGATAACAGGGAACCAGAAAGCTCTGACTTGACTGCAGTAGTTCCCCATTCAAGTGCTC GGAAGAAAAGAAAGAGGGAAGTGGAACAGCTAACAGAGAACCAATCTGATTGCAGCAACTTTATAAGAAGTCCATGTGAAGGGCTGAGGCCTAGAGCTGG TAAGATCACTGCAGATAAAAGAAGTGGGGAGAGCAGTCAAAATGCCAAAGAACACCAGGATGATAGAAGGGCAAATAGAGTTCCGGTTCCTCGCAAGAAT AAAACTGATGATGTCAGAAAGCCCCACAGTTGTGACCTTGACGGCTGTGATATGAGTTTCACCACTAAGGCTGAGTTACAGTTGCACAAACGTAACATTT GCCCATATAAAGGGTGTGGTAAGAAGTTCAGCTCCCACAAATATACCTTGCTTCACCAGCGTGTTCACGATGATGAAAGGCCCCTCAAATGCCCATGGAA CGGTTGTTCCATGACATTCAAGTGGGCATGGGCAAGGACAGAGCATATACGTGTGCATACCGGGGAGAAACCTTATCAATGCAAGATCGAGGGATGTGGC CTTTCCTTCAGGTTTGTATCAGATTTTAGTCGGCACAGGCGGAAAACAGGACACTATGTGCAACCCTCTTGAGATATAAAATTCATTTTGTATTTCATCA TTTTGTAATTGTGCACATATACAATTATGTGTAAGGCATTAGAGTTGGCATTGGTAACTTTTCAGAGTTTTAATCAGCAGATGTAGCAGCTGCCTCTACA GGAGGGAAATCTTTCCATTAGAGAGTGCTACATCATATCCCTGCTGGCTTATTTTTTGTGGTTAACTGTATTTATGGTTCTTTTGAAGCAGTTGATATAT CCTTCATCTTTATGGATAGTTTGTTCATTGTTGTTGTATATTAGTTTGGATTAAAACCACATTTGTTTTATAGAGTAAGAATCACAGGCTTACATGCTCT CAATGGTTCTATTTGATTTCTTTTGACTAGTAAATTCAATGGTTAAACATCCGTTTACAGTTGAG
• Tissue: pods
• Gene name: LI_gene_188785;
• Additional information: details;

Expression of Ll_transcript_399271

FPKM

• PAB: 0.3
• PNAB: 3.2
• PS1: 4.5
• PS2: 3.6
• PS3: 3.8
• PW1: 2.4
• PW2: 1.5
• PW3: 1.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_399271

• Blastp: Probable lysine-specific demethylase ELF6 from Arabidopsis with 56.12% of identity
• Blastx: Probable lysine-specific demethylase ELF6 from Arabidopsis with 56.24% of identity
• Eggnog: Zinc finger protein(COG5048)
• Kegg: Link to kegg annotations (AT5G04240)
• CantataDB: Link to cantataDB annotations (CNT0000082)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019428052.1)
• Pfam: jmjN domain (PF02375.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;