Ll_transcript_399274

• Id Trinity: TRINITY_DN51945_c0_g1_i5
• Name Transcript: Ll_transcript_399274
• Sequence: ATGAAAACCATTGCTCTCTCTTTCTCACTGTTTCTCAACTTTGAAGCCTAATCACGCATAGTGTTTTGCAATTTCAGGTTCCTCAACTCACTTATACCTT TAATTCTCGCTATGCATTTCGCTACTTTGATTAATTCGTGACCCTTAAGAGTTCTCAATTGCTCCAAAATCAAAATTTCAACAAATTTAGGGTTTTGAAA ACTTCAATTCACACCTCTGCTGCACATGGTTGAGTAGAATTAGCTTGCTGCCCCAACTCGCATTGTTGTTTTCAATCTTCAGATTTTATTTTTTAATTAC TTTGTTGATGTAATGGGTAATGTTGAAATCCCCAATTGGCTTGAAGGATTGCCTCTGGCACCAGAATTTCACCCCACCGACACTGAATTTGCCGACCCAA TTGCTTATATTTCAAAGATTGAGAAGGAAGCTAGCACCTTTGGGATATGCAAGATTATTCCACCATTGCCCAAACCTTCAAAAAAATATGTTTTTTCTAA TTTGAATAGGTCCCTCTTGAAATGCCCTGATTTGAGTCAAGATAATAGTTCCTTAGGCATTTGTAATTCTCTGAGTATGGTCCCAGCGGATAGTTGTAGT CATAGGGCGTCTCGTGCTGTGTTTACTACTAGGCAGCAAGAACTAGGGCAGAGTGTGAAAAAGGCCAAAGGGGCAGGTCAGAACCCACTATCATGTGTGC AAAAGCAAGTGTGGCAAAGTGGGGAAGTTTATACGCTTGAACAGTTTGAGTCTAAATCAAAGACCTTCGCAAGAAGCGTGCTGGGGACGGTGAAGGATGT TTCTCCACTGCATATAGATGCTATGTTTTGGAAGGCAGCTTCAGAGAAGCCTATGTATATTGAGTATGCCAATGATGTGCCTGGCTCTGCTTTTGGAGAA TCCAAGGATGAATTTTGTTACAGTCCTAGGAAGCGAAGAAGGATGCCTTATAACAGCAGAATAGATAGCCATGTTTGTAAACAAACTGAAATGAATAGCA TTGTAAGAGATGCCAAAAGTAATGAGACTAAGGTTGCCTCTTCCCAGAGTTGTGCAGACACTTGTTTAAAGACGTCCGAAGCAGCTATGCCTGTGTCAAC ATTTCCATTGAATGAAGCTTCACAATCTTCTGGGGGAAAAATTTCAGAAGCCAGCAATGATATGCAAGGCCATTCTGGTTGGAAGCTTTCAAATAGTCCC TGGAACTTACAGGTTATTGCACGCTCACCTGGCTCGCTAACACGCTTTATGCCAGATGATATCCCTGGAGTTACTTCCCCCATGGTGTACATTGGTATGC TGTTCAGTTGGTTTGCCTGGCATGTAGAGGATCATGAGCTTCATAGCATGAATTTTCTTCACACTGGATCATCGAAGAGTTGGTATTCTGTTCCCGGAGA TTATGCATTTGCTTTTGAGGAAGTCATCCGCTGTCAGGCTTATGGCGATAACGTTGATCACTTAGCTGCTTTGAAACTTTTGGGGGAGAAAACAACTCTT TTATCACCTGAGGTAGTTATTGAATCTGGGATTCCTTGTTGCAGGTTAATACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAG GATTCAGCCACGGTTTTAACTGTGGGGAAGCTGCCAACTTTGGAACCCCACAATGGCTTACAGTAGCTAAGGAAGCCGCAGTGCGTAGAGCTGTGATGAA TTATCTTCCCATGCTCTCCCATCAGCAATTGCTTTACTTGCTGACCATGTCTTTTATTTCAAGGTGAGATAATTTTCCACTGCTGCTTGTATATGCAGGT ACTGCTCTATGGGGGTTACATTATCACTATACTGAATAATTGCCTTCATTTCCCTTTCAATTATTTTTTACCAATAAAAAATAGTATTGGGGATAGTCAA TTTGATTTTTTGTGGTGGGTGTTTTTTAGTTAAATAATGTATCATTTATGTTTAACGGCATGGTTGGACTAGTAGGCTAAATTGGAAAGACTGAAAGGCT GTATGTGAACCCGTTGTTTTAACTTTCAAACTGTCTTTCAGTGTAATTAGCGAAGTCCTCGGCTTTTACCAATTACTCTAACTGTATCCTATTCAAATTA GAGATGATTGGGATTTTCTCACCTTGTATTGAACATTAATATATGTCAGAGTTTTGTGAGTTATTTTAGATTAAAAATGTTATACATATGTGGTTCAATT GCTAATTCAATATGACCTTGAAGTTCTTAGTTGGCTTTTACATTGTACAGATCTGTCTGCTTTTCCTAGTTTTCTATCACAAATATTATCCTGCCTAACA TTTAGAGGTATTATTGTAACAAATATTATGCCTTTGTCTAAGAAGTATCAAGTGGTTAACTAATTACATTTTTATTCCTCTTGGTAATCTGTTTGGTTGA CTTGTTAGAGTGCCAAGAACACTATTACCTGGTGTGTGTAGTTCACGTCTAAGAGGTCGGCAAAAAGAAGAAAGAGAGTTGTTAGTAAAAAAAGCTTTTA TAGAAGATATGTTGCAGGAAAACAAGCTGATATCCATCCTTCTTGGAAAGGAATCAACCAAACAAGCTGTTTTATGGAATGCTGATTTACTACCAAATTT CAGTAAAGATGGTTGGTTCTCTGATATAGCGTCTACTAGTGGAATTTCTGCAGCCAACATGTCAAATATTAGTTCTTCAGATAAAAGCAGCCATCATCTG TTTGACGAGATGAGTTCGTATATGGACAATCTGAGTGATTTACATCTTGGGGATGATGATTTTTCACATGACTTCCAAACTGATTCAGGACCCTTGGCTT GTGTGGGTTGTGGACTCCTTGGTTTTCCATTTATGACTGTGGTGCAACCATCTGAGAAATTGATAATGGAACTTTTTCCTGTTAATCATCATCTAGTTCA AGATTCCTCTCTGAACTCTACTGCCTCCCTTCATAGCTCCACTTCAAATCTTTGTGTTTCTGAACTTTCTTCAGCAAAGGAACCATCTAATCAATCATTG AAGACATTCAATAAATGTTGGAATGCCTCCAGTAAATTTTTGAGACCACGGATTTTCTGCCTGGAGCATGCTGTTCAGATAGTGGACATGTTGCAGTCCA AAGGTGGAGCCAATGTGCTAATAATTTGCCATTCCGACTACCAGAAAATGAAGGCACATGCCAGTGCAGTTGCAGAAGAGATACA
• Tissue: pods
• Gene name: LI_gene_188785;
• Additional information: details;

Expression of Ll_transcript_399274

FPKM

• PAB: 0
• PNAB: 0.4
• PS1: 0.5
• PS2: 0.3
• PS3: 0.5
• PW1: 0.5
• PW2: 0.2
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_399274

• Blastp: Probable lysine-specific demethylase ELF6 from Arabidopsis with 66.46% of identity
• Blastx: Probable lysine-specific demethylase ELF6 from Arabidopsis with 66.46% of identity
• Eggnog: Zinc finger protein(COG5048)
• Kegg: Link to kegg annotations (AT5G04240)
• CantataDB: Link to cantataDB annotations (CNT0000082)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019428053.1)
• Pfam: jmjN domain (PF02375.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;