Ll_transcript_398562

• Id Trinity: TRINITY_DN51946_c1_g1_i10
• Name Transcript: Ll_transcript_398562
• Sequence: CTGGGTTTTACTCTTTATGTATGATAGTTGTGGCACATTCCTCACTTGTCAATCATTGTTCGGTATAAGATATTTTACTATTTTAGTCATATGCGTCAAG ACACTGACTCAAAAACAACTTGGTACATGTTTCATACGATGCGTCAGTTCAATTTTCTCTGTGCAATTATTTATAGTTAATCAAAATACCATGTTGTACC AAATTGTCCATTCTTGTTGTTGAATAAATGATCTGGTCCTTCCTTTTGGTTTTGAGCAATCTATCTTCTTTTTCTCTCATGCTTTTGGATAAGGAACAGT ACGAGCCTACCTGGAATCTTTCTACTCCTTGACTCTGCAGAACAATACAGAGTATTATTAACGTATTTGGATCCTTGATCCCACTCAAACCCATACTGGT ATCTCATGTCTGTAGTTTTTTTTATTTTTATATAAAAGTAAAATGAAAGTTAATGGGCTTTCAATCTATTATAGCCTTGAATCGGGATTCTGTTATATAT TCAGTTAGATTAGACCCCTGTATAAACACTGGGATTTGTTCTATATCTCATTCAGTAAATGATAGTTGCACACCTTGGTTTCAGATTCCCCCCTCTTTCT TTTCACTGACTGTCAATGTTCTTGGATTCTGAGTATATCTATATAATAGTGTTACATGGGAAATGAACAGTAGGTCAGCCAGCCTCCCAGTTCAATGGTG GTTAGCTTGGGGAGCACATGACATTACAAAGACATCCAAAACTCTACAGAGGACATCTCTATATTGAGTACCGAATTGGTAGAAGCTAATCAAGAAGATT ATGTTGTGGTCTTTTTTTCAATTCGACGTTTATTCTTGTCCTATTAGTGTGCACTTAATGAACTAAACACTTCACACCATGAAAACATTCTTCAGACTAG ATCTTATCTATTGTTTATTTTGGTTGTCCTCGAAGAACGTGTATATTGGGTTCTGATGTGCCTTTCGCTTACACTAGGAGATGCTTCATGATTTGCTTGG ACGTGTTCTTCCTGCATGTAAATCTGGTTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCATCTGCAGCTGCAATTGTT TCTTTGCAGGGTCAAACATTGGACTCAATTGTCATGCTGTTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCCACTAGCAGTGTAATGAATT TGCTAGCAGAAATCTATTCTCAAGAAGAGATGGTCCCCAAGATGTATGAAGTTTTTAAATTAGGAGACAGTGAAATGGCTGATCAAAATGGAGTTGGTGT TGGTTGTGAGGATGGAGAAGAAAATCCTTTTGTTCTTTCAACATTGGCGCCTCGTTTGTGGCCATTTATGAGGCATAGTATCACGTCAGTCCGTTATTCA GCAATACGAACTCTGGAGAGGCTACTTGAAGCTGGACATAAGAGAAGCATGTCTGAGCAGGCTAGTGCTTCATTTTGGCCTTCTTGTATATTTGGAGATA CCCTTAGAATTGTCTTTCAGAATCTGTTGTTGGAAACCAATGAGGGTATTTTGCAATGTTCTGAGAGAGTGTGGAGCCTCCTTGTTCTGTGTTCTGTGGA GGACTTGGATGCTGCTGCGAAGTCTTACATGGCTTCTTGGATAGAACTTGTAGCAACACCATTTGGTTCAGCATTAGATGCCTCAAAGATGTTTTGGCCT GCTGCCTTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAGAGCAGCAAGGATTGAAAATGAATGTGGTGGAGATCTTGGCCTTGATTCTACAA AAGGATCTATACCACAAGATAGAAATGGAGATGTTGCTATGAGTTCTGCTAAGATAGTTGTTGGTGCTGATATGGACACATCTGTAACTCATACTCGGGT GGTTACAGCAACTGCATTGGGAATTTTTGCCTCTAAGCTGCCAGAGGATTCTGTAAAATTTGTGATTGATCCATTGTGGAGGTCTCTAACCGCTTTGTCT GGTGTACAACGCCAGGTTGCATCTATGGTACTTATATCTTGGTTCAAGGAGATAAAGAGCAGGAATTCATCCGAGAATCTTAATGGTATTCCTGGTTCCC TCAAAGATTGGTTGCTGGACTTATTAGGATGTACTGACCCAGCATTCCCAACAAAAGATTCACTCCTTCCTTATGCTGAGCTTTCAAGAACGTATTCAAA AATGCGTAATGAGGCTGGCCAACTGCTAAATGCTATCAAGTCTTCTGGTATTTTTAATGAGTTATTGTTGACTACCAAAATTGATTTGAATAGCTTGAGT GTCGATGATGCCATTAGTTTTGCATCAAAAGTTCCAGCCTTGTCCAATGATAGTTCTGTGAACGAATCCCTGGAAAAGAACACTGTGGATGATATTGAAT CCTCAAAACAGAGGCTCTTGACAACTTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATATTACGGTCTCGTCAGCAGTTGCAGCAGCAGTTGTCTG GATGTCTGAGTTTCCTACACGACTCACCCCAATCATTTTGCCTTTGATGGCTTCAATCAAAAGAGAGCAGGAGGAAATACTGCAAATGAAATCAGCTGAG GCACTTGCTGAGCTAATGTATCACTGTGTCGCACGTAGGCCTTGCCCCAATGATAAATTAATAAAGAATATATGCAGTTTGACATGCATGGATCCCTCTG AGACTCCTCAAGCTAAATCCATTTCCTCCATGGAGAGTATTGATGACCAAGGTCTTCTGTCTTTTGGAACTCCCTTGAGCAAGCAGAAGTCAAAGGTCCA TGTGCTTGCTGGTGAAGATCGATCAAGGGTAGAAGGATTTATAAGTAGACGAGGGTCTGAACTATCATTGAGGCTTCTGTGTGAGAAGTTTGGTCCTTTG TTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTAACTGAGGTGCTTAAGCCATGCTCCTCCGAGTCTGAAGCTGTTACTAATGAAAATCAAGTTTCTC TGACGATAGAATCTTTTAGTGATCCCCAGATCTTGATTAACAATATCCAGGTGGTACGATCTATTGCCCCCTTGTTAAATGAGGAGTTGAAGCCAAAACT GTTGACACTTCTCCAATGTATTTTCAAATGTGTTAAGCT
• Tissue: pods
• Gene name: LI_gene_188793;
• Additional information: details;

Expression of Ll_transcript_398562

FPKM

• PAB: 0.8
• PNAB: 0.5
• PS1: 0.3
• PS2: 0.8
• PS3: 0.2
• PW1: 0.6
• PW2: 1.2
• PW3: 2.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_398562

• Blastp: TATA-binding protein-associated factor BTAF1 from Arabidopsis with 65.34% of identity
• Blastx: TATA-binding protein-associated factor BTAF1 from Arabidopsis with 65.38% of identity
• Eggnog: excision repair cross-complementing rodent repair deficiency complementation group(ENOG410XP4Z)
• Kegg: Link to kegg annotations (AT3G54280)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019412827.1)
• Pfam: Domain of unknown function (DUF3535) (PF12054.7)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;