Ll_transcript_398553

• Id Trinity: TRINITY_DN51946_c1_g1_i2
• Name Transcript: Ll_transcript_398553
• Sequence: AGAATAAGGATCATATAAAAAATAGGAATGCAGCAGGGCTGCCCAATTCTTTGCATGTAAAATTTGGGAAATATCTTAAAACAGCCATGGACAGAACACC AAAATGAAGCAAATCAGAATCCCATGTTATACCAAGTTCAATGACAAAGAGGCACCTTTAAAAAGTGCAAGTACTATGCTCCAACCAGATGTACCAAAGA ATTGCATAAACTGAACACTGCCACAACCTTTCGTCCCCTTGTCTTACCTAAGCCATTATACTGAACCATCAAAAACTGCTCCATAGTAGAACAAATATAG CACTCACCATGTGCTGAAAAATGGTTGTTTCATATTGTTTGAAAATAGTTTCCCCTCTATTTTTTGTTTGCCATATCTTTTGAAAGCTATTTACTTGTTT TTGCCCCTTAGCAGCTTTGATATCAACAAGGTGCTTGAATTTGGAGCTTTATTAGCATCGGGAGGACAGGAATATGATATCGGTAGTGATAATATAAAGA GCCCGAAGGAGCGATTAGTTCGCCAGAAACAAAGTCTTCGACGTCGTTTAGGTTTGGATGTATGTGAACAATTTATGGATATCAGCGATGTAATAAGAGA TGAAGATCTTATGGCACACAAATCAGTCTCACATCTCAATGGTAGCCATAGAGCATTTACATCTTATTCTGTGCATAATAACATCCAGAAAATGGTTGCA AATATGGTTCCTACTGTGAAATCAAAGTGGCCAAGTGCAAGAGAACGGAATCTTTTAAAACGTAAAGCAAAAATAAACTTGAAGGACCAAACTAAAAGTT GGTGTGAAGATGGAAGTACTGAGGCACCAGGTACTCCGAATTTGACTACTAAGGGCACATGTCCCGACTCAGTGAATTACAGTAAGCCGTTCGTAGATGT TAATCATGATGAAGATGGCTTTGAGCATGATGAGAATGGACAATGGCCTTTCCACACTTTTGTTGAGCAACTTATCATTGATATGTTTGATCCTGTATGG GAGGTACGACATGGTAGCGTGATGGCATTGAGAGAGATTTTAACACATCAAGGCGCATCTGCTGGGGTCTTTAAACACAACTCTCGGTTTGATGGGGCTT TCATTGGTGAGTTAGAAGACAAAAGTATAACAAATATGCCAAAGAGAGAGAGGGAGATTGATTTAAACATGCAAGTTTCAGTGGATGAGTTTGAGTCAAA CTTGAAGAGGCCGAAACTTGAAGATGTATCATCATCAACCTCTATGGATAGCGTGATGACTTGCAGCAATGAATGCGATATAGACCTCAGCATTAGTTCT GAAGCTTACGGATGCAATTTACCTTTGGAGTATGGGAATGGGCAATTTAATGGTAATTCTGTGGACATGGATCTGGAATCTTTCTCTGATGGCTTACATG ATACGTTCAAGGAACCTGCTAATTTCGCAGAGCAGAAGGGTTATCCTGATGACAATAAGATTCCCTCTGGAAATCTTCATGTGCTGAAAAATCTTCCTCA GAATTGTGAACTTATGAATTTGGTTAAAGTGGCTAGAAGCTCCTGGCTTCAGAACTGTGGATTTCTTCAAGATTGTGTGATACGCTTTCTGTGTGTGCTG TCACTAGACCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCTGTGCGTGAAACCTGTGCTCAGGCATTAGGTGCTGCATTTAAGTATATGCATC CGGCACTAGTAAATGAAACATTGAACATATTGCTGATAATGCAGTGTAGACCAGAATGGGAGATTCGTCATGGCAGCCTTCTTGGTATCAAATATTTAGT TGCTGTGCGGCAGGAGATGCTTCATGATTTGCTTGGACGTGTTCTTCCTGCATGTAAATCTGGTTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCT GCTGATGCTTTAATACCATCTGCAGCTGCAATTGTTTCTTTGCAGGGTCAAACATTGGACTCAATTGTCATGCTGTTGTGGGATATATTGCTTGATTTGG ATGATTTAAGTCCATCCACTAGCAGTGTAATGAATTTGCTAGCAGAAATCTATTCTCAAGAAGAGATGGTCCCCAAGATGTATGAAGTTTTTAAATTAGG AGACAGTGAAATGGCTGATCAAAATGGAGTTGGTGTTGGTTGTGAGGATGGAGAAGAAAATCCTTTTGTTCTTTCAACATTGGCGCCTCGTTTGTGGCCA TTTATGAGGCATAGTATCACGTCAGTCCGTTATTCAGCAATACGAACTCTGGAGAGGCTACTTGAAGCTGGACATAAGAGAAGCATGTCTGAGCAGGCTA GTGCTTCATTTTGGCCTTCTTGTATATTTGGAGATACCCTTAGAATTGTCTTTCAGAATCTGTTGTTGGAAACCAATGAGGGTATTTTGCAATGTTCTGA GAGAGTGTGGAGCCTCCTTGTTCTGTGTTCTGTGGAGGACTTGGATGCTGCTGCGAAGTCTTACATGGCTTCTTGGATAGAACTTGTAGCAACACCATTT GGTTCAGCATTAGATGCCTCAAAGATGTTTTGGCCTGCTGCCTTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAGAGCAGCAAGGATTGAAA ATGAATGTGGTGGAGATCTTGGCCTTGATTCTACAAAAGGATCTATACCACAAGATAGAAATGGAGATGTTGCTATGAGTTCTGCTAAGATAGTTGTTGG TGCTGATATGGACACATCTGTAACTCATACTCGGGTGGTTACAGCAACTGCATTGGGAATTTTTGCCTCTAAGCTGCCAGAGGATTCTGTAAAATTTGTG ATTGATCCATTGTGGAGGTCTCTAACCGCTTTGTCTGGTGTACAACGCCAGGTTGCATCTATGGTACTTATATCTTGGTTCAAGGAGATAAAGAGCAGGA ATTCATCCGAGAATCTTAATGGTATTCCTGGTTCCCTCAAAGATTGGTTGCTGGACTTATTAGGATGTACTGACCCAGCATTCCCAACAAAAGATTCACT CCTTCCTTATGCTGAGCTTTCAAGAACGTATTCAAAAATGCGTAATGAGGCTGGCCAACTGCTAAATGCTATCAAGTCTTCTGGTATTTTTAATGAGTTA TTGTTGACTACCAAAATTGATTTGAATAGCTTGAGTGTCGATGATGCCATTAGTTTTGCATCAAAAGTTCCAGCCTTGTCCAATGATAGTTCTGTGAACG AATCCCTGGAAAAGAACACTGTGGATGATATTGAATCCTCAAAACAGAGGCTCTTGACAACTTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATAT TACGGTCTCGTCAGCAGTTGCAGCAGCAGTTGTCTGGATGTCTGAGTTTCCTACACGACTCACCCCAATCATTTTGCCTTTGATGGCTTCAATCAAAAGA GAGCAGGAGGAAATACTGCAAATGAAATCAGCTGAGGCACTTGCTGAGCTAATGTATCACTGTGTCGCACGTAGGCCTTGCCCCAATGATAAATTAATAA AGAATATATGCAGTTTGACATGCATGGATCCCTCTGAGACTCCTCAAGCTAAATCCATTTCCTCCATGGAGAGTATTGATGACCAAGGTCTTCTGTCTTT TGGAACTCCCTTGAGCAAGCAGAAGTCAAAGGTCCATGTGCTTGCTGGTGAAGATCGATCAAGGGTAGAAGGATTTATAAGTAGACGAGGGTCTGAACTA TCATTGAGGCTTCTGTGTGAGAAGTTTGGTCCTTTGTTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTAACTGAGGTGCTTAAGCCATGCTCCTCCG AGTCTGAAGCTGTTACTAATGAAAATCAAGTTTCTCTGACGATAGAATCTTTTAGTGATCCCCAGATCTTGATTAACAATATCCAGGTGGTACGATCTAT TGCCCCCTTGTTAAATGAGGAGTTGAAGCCAAAACTGTTGACACTTCTCCAATGTATTTTCAAATGTGTTAAGCT
• Tissue: pods
• Gene name: LI_gene_188793;
• Additional information: details;

Expression of Ll_transcript_398553

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0.1
• PS2: 0.6
• PS3: 0.2
• PW1: 0.6
• PW2: 0.1
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_398553

• Blastp: TATA-binding protein-associated factor BTAF1 from Arabidopsis with 60.71% of identity
• Blastx: TATA-binding protein-associated factor BTAF1 from Arabidopsis with 61.33% of identity
• Eggnog: excision repair cross-complementing rodent repair deficiency complementation group(ENOG410XP4Z)
• Kegg: Link to kegg annotations (AT3G54280)
• CantataDB: Link to cantataDB annotations (CNT0001953)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019412827.1)
• Pfam: Domain of unknown function (DUF3535) (PF12054.7)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;