Ll_transcript_398560

• Id Trinity: TRINITY_DN51946_c1_g1_i8
• Name Transcript: Ll_transcript_398560
• Sequence: TCCGCTTATTTCCTCTTCCACAGATTAGTAAGAAGTATACAGGGATCAATAAAGCATTTGGAATGATTTGTAATGGCCCAGCAGTCATCTAGGCTTCAGC GGTTGCTTACTCTCTTGGACACTGGGTCAACCCAAACAACACGGTTGACTGCTGCTCGTCAGATAGGGGACATTACAAAATCACACCCTCAAGACTTGAC CAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGTAAAAAATGGGATACAAGAGTGGCAGCTGCTCATGCAATTGGGTCTATTGCTGAGAATGTTAAG CACATAAATTTGACGGAACTTCTTGCTTCTGTTGTATCAAAAATGTCTGAGGATGGTATATCTTGCAGCGTTGAGGATCTGTGTGCATGGCCTTATGTAC AATCAAAGATCAATGGAAGCTCATTTAGAAGCTTTGATATCAACAAGGTGCTTGAATTTGGAGCTTTATTAGCATCGGGAGGACAGGAATATGATATCGG TAGTGATAATATAAAGAGCCCGAAGGAGCGATTAGTTCGCCAGAAACAAAGTCTTCGACGTCGTTTAGGTTTGGATGTATGTGAACAATTTATGGATATC AGCGATGTAATAAGAGATGAAGATCTTATGGCACACAAATCAGTCTCACATCTCAATGGTAGCCATAGAGCATTTACATCTTATTCTGTGCATAATAACA TCCAGAAAATGGTTGCAAATATGGTTCCTACTGTGAAATCAAAGTGGCCAAGTGCAAGAGAACGGAATCTTTTAAAACGTAAAGCAAAAATAAACTTGAA GGACCAAACTAAAAGTTGGTGTGAAGATGGAAGTACTGAGGCACCAGGTACTCCGAATTTGACTACTAAGGGCACATGTCCCGACTCAGTGAATTACAGT AAGCCGTTCGTAGATGTTAATCATGATGAAGATGGCTTTGAGCATGATGAGAATGGACAATGGCCTTTCCACACTTTTGTTGAGCAACTTATCATTGATA TGTTTGATCCTGTATGGGAGGTACGACATGGTAGCGTGATGGCATTGAGAGAGATTTTAACACATCAAGGCGCATCTGCTGGGGTCTTTAAACACAACTC TCGGTTTGATGGGGCTTTCATTGGTGAGTTAGAAGACAAAAGTATAACAAATATGCCAAAGAGAGAGAGGGAGATTGATTTAAACATGCAAGTTTCAGTG GATGAGTTTGAGTCAAACTTGAAGAGGCCGAAACTTGAAGATGTATCATCATCAACCTCTATGGATAGCGTGATGACTTGCAGCAATGAATGCGATATAG ACCTCAGCATTAGTTCTGAAGCTTACGGATGCAATTTACCTTTGGAGTATGGGAATGGGCAATTTAATGGTAATTCTGTGGACATGGATCTGGAATCTTT CTCTGATGGCTTACATGATACGTTCAAGGAACCTGCTAATTTCGCAGAGCAGAAGGGTTATCCTGATGACAATAAGATTCCCTCTGGAAATCTTCATGTG CTGAAAAATCTTCCTCAGAATTGTGAACTTATGAATTTGGTTAAAGTGGCTAGAAGCTCCTGGCTTCAGAACTGTGGATTTCTTCAAGATTGTGTGATAC GCTTTCTGTGTGTGCTGTCACTAGACCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCTGTGCGTGAAACCTGTGCTCAGGCATTAGGTGCTGC ATTTAAGTATATGCATCCGGCACTAGTAAATGAAACATTGAACATATTGCTGATAATGCAGTGTAGACCAGAATGGGAGATTCGTCATGGCAGCCTTCTT GGTATCAAATATTTAGTTGCTGTGCGGCAGGAGATGCTTCATGATTTGCTTGGACGTGTTCTTCCTGCATGTAAATCTGGTTTGGAGGACCCAGATGATG ATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCATCTGCAGCTGCAATTGTTTCTTTGCAGGGTCAAACATTGGACTCAATTGTCATGCTGTTGTGGGA TATATTGCTTGATTTGGATGATTTAAGTCCATCCACTAGCAGTGTAATGAATTTGCTAGCAGAAATCTATTCTCAAGAAGAGATGGTCCCCAAGATGTAT GAAGTTTTTAAATTAGGAGACAGTGAAATGGCTGATCAAAATGGAGTTGGTGTTGGTTGTGAGGATGGAGAAGAAAATCCTTTTGTTCTTTCAACATTGG CGCCTCGTTTGTGGCCATTTATGAGGCATAGTATCACGTCAGTCCGTTATTCAGCAATACGAACTCTGGAGAGGCTACTTGAAGCTGGACATAAGAGAAG CATGTCTGAGCAGGCTAGTGCTTCATTTTGGCCTTCTTGTATATTTGGAGATACCCTTAGAATTGTCTTTCAGAATCTGTTGTTGGAAACCAATGAGGGT ATTTTGCAATGTTCTGAGAGAGTGTGGAGCCTCCTTGTTCTGTGTTCTGTGGAGGACTTGGATGCTGCTGCGAAGTCTTACATGGCTTCTTGGATAGAAC TTGTAGCAACACCATTTGGTTCAGCATTAGATGCCTCAAAGATGTTTTGGCCTGCTGCCTTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAG AGCAGCAAGGATTGAAAATGAATGTGGTGGAGATCTTGGCCTTGATTCTACAAAAGGATCTATACCACAAGATAGAAATGGAGATGTTGCTATGAGTTCT GCTAAGATAGTTGTTGGTGCTGATATGGACACATCTGTAACTCATACTCGGGTGGTTACAGCAACTGCATTGGGAATTTTTGCCTCTAAGCTGCCAGAGG ATTCTGTAAAATTTGTGATTGATCCATTGTGGAGGTCTCTAACCGCTTTGTCTGGTGTACAACGCCAGGTTGCATCTATGGTACTTATATCTTGGTTCAA GGAGATAAAGAGCAGGAATTCATCCGAGAATCTTAATGGTATTCCTGGTTCCCTCAAAGATTGGTTGCTGGACTTATTAGGATGTACTGACCCTACATTC CCAACAAAAGGTTCACTCCTTCCTTATGCTGAGCTTTCAAGAACTTACTAAAAAATGTGTAGTGAGGCTGGGCAATTGTTAAATGCTATCATGTCTTCTG GTATGTTTAATGAGTTATTGTCGACTGCCAAAATTGATTTGAATAGCTTGGGCGTTGATGATTATGATTTATTTATGAGCTTAGACTTTTACTGTCAAAC ATATGGGTACCAAGAAAGTCGAAACATGATTATAATTTTGGACTGAGGTAAATGGTTTTTGCTAAGAAGCATGAATTTGGATACATGTCATGAGTATGAT ACAATACAAATATGTTGATATGGAAAAACACCATAAAAAAATTGAAAGACATATAAAGCAAAGTACATGAAATGTATTACAAACATTGAGTGAAATTCAT TAGTTTCAACATGGTTAATTAAGGCTAGTTCATTTATGAATTTAGAAATTTAGAAATGGATAAATGGTTTTTGGTGAGATGAGTTGGGAACTTGTGCATT AGGGGTTTATGCATTAATGAATTGTATGTTCTCTTTTAGTTAGGGATTATCATGTAAGTCATGTTGTCATTGAAAAATAGTGTTCATTGGAGAACTATTA TTTTTAGCAGCTTTAGATTTCAGAAGGTTGTCTATGAATCATATGACATTTCATATATGTTTTCTTGGTAGTTAGCACTTTCTATATGATATTTTAAACA CTGCTTACTTTTATGAGGACTTTTATGTATGGACTGTGCTCTCCACTCTCCTTTTTTGGGATTTCAATCAATATACTTGTTTTAAACTCATGGTTCATTT TTTTGATTGTATGTGGATTGTCATTTATTCTTTTGTCCAGATTTGTTTGTCTTCATTAGACATATACATCGAGAATAGCTGTTAATCCCTTCACAAACCT ACCTCATTTGTATGATACCCATATGATGGAACAATATAAGGGAGCAACATAGGTACTAATTCCTCATGTTTTTC
• Tissue: pods
• Gene name: LI_gene_188793;
• Additional information: details;

Expression of Ll_transcript_398560

FPKM

• PAB: 4.7
• PNAB: 1.9
• PS1: 1.3
• PS2: 2.3
• PS3: 2.8
• PW1: 3.7
• PW2: 7
• PW3: 9.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_398560

• Blastp: TATA-binding protein-associated factor BTAF1 from Arabidopsis with 61.13% of identity
• Blastx: TATA-binding protein-associated factor BTAF1 from Arabidopsis with 59.18% of identity
• Eggnog: excision repair cross-complementing rodent repair deficiency complementation group(ENOG410XP4Z)
• Kegg: Link to kegg annotations (AT3G54280)
• CantataDB: Link to cantataDB annotations (CNT0001953)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019412830.1)
• Pfam: Domain of unknown function (DUF3535) (PF12054.7)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;