| Id Trinity | TRINITY_DN51955_c1_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_397085 |
| Sequence | GTGAGTTTAACCGAACACAAAGCACAGAGCAACAACAACAATGGCATCGTCATTCGTCAAACTCGATGATTCTCCAATGTTCCAGAAGCAGTTATTTTCT CTTGAAGAAACGACTGACGAGTTAAAGGACCGGTGCCAGAAACTATTTAAAGGGTGTAAGAAGTTTATGACAGCTTTGGGGGAACAATATAATGGGGAAA TTTCCTTTGCTGATTCATTAGAAGCATTTGGCGGTGGCCAGGATGACCCTGTTAGTGTATCAATTGGAGGGCCGGTCATATCTAAGTTTATTACCACACT GCGTGAGCTAGCTAGTTTTAAAGAGCTTCTCCGTTCACAGGTAGAGCACGTGTTGATTGACCGGCTGGCGGAGTTTATGACTGTTGATTTGCAAGATGCA AAGGACTCTCGCCGCCGTTTTGACAAAGCTGTGAATTCTTATGATCAGTCACGAGAGAAGTTTGTGTCCTTGAAGAAAAATACCCCGGGAGACATTGTCG CTGAATTAGAAGAGGATCTACAAAATTCAAAGTCAGCATTTGAAAAAAGTCGCTTCAATCTAGTGAACTCGCTCATGAATATTGAAGTGAAAAAGAAGTA TGAGTTCTTGGAGTCCGTTAGTGCAATAATGGATGCTCATCTGAGATACTTTAAGTTGGGTTATGAGTTACTGAGCCAAATGGAGCCTTATATTCACCAG GTGCTAACATATGCTCAACAATCTAAAGAAATGGCTAATATCGAGCAAGATAAGCTTGCAAAACGAATCCAGGAATACCGAACCCAGGCCGAGCTGGAAA ATACACGAGCTTCTTGCAATACAGAACCCTTGCCAAATGCTGATGGCACCCATGTTGTAGGCTTGAACTCTTATAGAAGTTTTGAATCAGGGATGCAGCC TGAAACCAAGGGCGAGGTTCAAACAGTTAAACAGGGCTATCTGTTGAAACGATCATCAAGCTCGCGTGGAGATTGGAAACGGAGGTTCTTTGTACTTGAT AACCGAGGGAGTTTGTATTATTACAGAGTGAAAGGAGGCAAACCCATGGGCTCTCAGTCATATCATTATACTCGTTCTGGTGAACAAAACAGTGGCATGT TTGGTAGATTTCGTTCAAGGCACAACAGGGCAGCATCGCTAAATGAGGATATTTTGGGTTGCTGTACAGTTGATCTGTGCACATCCACTATAAAGATGGA TGCAGAGAATACAGATCTACGACTTTGCTTCCGTATTATTTCTCCCTCGAAGTCATATACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTA AACAAAATAACTGGAGCCATCACATCGCTTTTTAATTCTCAGTTTCTTCAGCCTCATTATGGTAGATTACATTTTGAAAATAAAAACTCAGCAGGTAGTG CTTCCTTGACTAGCCAATCAGAGGATAGTAATAGATCTTTGATGGATGACATATATTCCAAGGAAGTGGTTAGTGTCTCTAAGATTTTAAGGGGAATTCC TGGGAATGATAAATGTGCTGAATGCGGTGCTACTGAACCAGAATGGGCATCTTTAAATCTTGGCATATTGCTGTGCATTGAATGCTCTGGGGTGCATCGA AATCTTGGAGTTCATATCTCAAAGGTGCATGTTTTCACACATAAATGCAAACCATTTATTTTAATGAGTTGACAATGTGGAAATAAGAAAAATTTGAAAC TCGAGTGAAAATTATTTTGAAGTCCATCTTTAATATTGAAGCATCCAAAATTTGAGATGATTAAGATTTTATTTTTTTGATTTTGTTCCTCTGGGATAGC TATATTGCACCATAGTGCTAACATATTTTTGCAGACTTTTCTTTCTTGCGTAAAGGGCTTTCACTTTAAGTTCAAGAATCATATTTTAGTTTTAGGAAGT TGTATGCACTTTTGTGTCTTTATAATTAAACTGAGTCAATTTGAATAAATAATGTTATTTCTGATTTGGTATTAACAAAGTATTATCATTTCCTAAATGT AAACATCCGATCTTCCAACTGCAGGTGAGATCTATAACGTTAGAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_188870; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_397085
| Blastp | ADP-ribosylation factor GTPase-activating protein AGD2 from Arabidopsis with 66.91% of identity |
|---|---|
| Blastx | ADP-ribosylation factor GTPase-activating protein AGD2 from Arabidopsis with 66.91% of identity |
| Eggnog | domain, ankyrin repeat and PH domain(COG5347) |
| Kegg | Link to kegg annotations (AT1G60860) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413717.1) |
| Pfam | BAR domain of APPL family (PF16746.4) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |