Ll_transcript_399448

• Id Trinity: TRINITY_DN51961_c2_g7_i1
• Name Transcript: Ll_transcript_399448
• Sequence: CTTAGAAATAAGAATGTTGAGTAAAACACAATAGTCTTACATATTTAATTAATATTAACAAAAACATGATTGTTATAACTTATAATATAGAAGAAGAACC ACAAATCCAAGCCCAGAGAAAGAGATAGGAAGAAAAGATGATGGTAAGAGTGAAAAGTGAAGAGTTTCTTCTTCTTTCTCCCAATCCTTTCCCAAACTCA ATTCCTAATTTCAACTCTTCCTTCTCTATGCGCACTTCTACATTCACCTTCTTCAGCTCTCTCTCCACTTTCCACAACCGCAACCGCCGCCACCTCACTC TATCACCGCCGCTCCTCCATTCCCCCCGCCTCTCCGCCTCTCTCAGAGTCGAACAGCCGGCCTGGGATTTCGAAGAACTAGACCTGCCGGAGGATAATGC GGCGTTCCAATTCGACCGGTCTTCTGTTTCTACGGTGGCGGAAATGAGGAAGCTGCCGAGTCCAGAGATGGAGGTGAAGGAGTTGAGCGAGCTGCCGGAA CAGTGGCGGAGGTCGAAGGTGGCGTGGCTGTGTAAGGAGTTGCCGGCGCATAAGGGGGGGAGTCTGGTGAGGATACTCAATGCGCAGAAGAAGTGGATGA GGCAGGATGATGCTACTTATGTTGTTGTTCATTGCTTGCGGATTCGCGAAAATGAGTCTGCTTTTAGGGTATACAAGTGGATGATGCAACAAAGTTGGTA TCGTTTTGATTTTGCTCTTGCTACCAAGCTAGCAGATTACATGGGGAAAGAGAGGAAGTTTTCGAAGTGCCGTGAGGTATTTGATGATATTATCAATCAA GGTCGTGTTCCTAGTGAGTCGACATTCCATATATTAATTGTTGCTTATCTTAGTGCTCCTGTTCAAGGATGTTTGGATGAAGCATGCAGCATTTACAATC GTATGATTCAGTTGGGTGGTTACCAGCCCCGTCTCAGCTTGCATAATTCCCTCTTCAAAGCTATTGTCAGCAACCCAGGGATCTCATCAAAGCAATACCT TAAGCAAGCTGAATTTATATATCATCATCTGGTTACAACTGGACTTGATGTACATAAAGATATTTATGGGGGGCTCATTTGGCTACATAGCTATCAGGAT TCCATAGATAAAGAAAGGATTGCAGAATTGAGGGAAGAGATGCTACGTGCTGGAATTCGGGAGGGCAGAGAGGTGCTAGTATCCATCTTGAGAGCTTGTG CAAGGGAGGGGGATGTGGAGGAAGCAGAGAAAATTTGGTTCAAACTTCTAAAGTTTGAAAGTGATCCCCCATCACAGGCTTTTGTGTATAGAATGGATGT ATACTCGAAGGTTGGCATGCCTATGAAGTCTTTAGAGATATTTAGGGAGATGCAGGAGAAACTAGGGCAAACAAATGCTGCAGCATATAATCAAATTATA GAGATACTATGCAAAGCACGAGAATTGGAATTTGCAGAATCAATCATGACAGATTTTGTCAAGAGTGATCTGAAGCCCCTTAGACCATCATATGTTTATG TACTAAACATGTACTTCAATTTGGAATTACATGATAAATTGGAAGAAGCGTTCTTCCAGTGCCTTGAGAAATGTCATCCTAATAGTACTATATACAGTAT ATATTTGGATTCTTTGGTGAAAGTTGGTAACCTTGACAAGGCTGAGGATATCTTTAACCAAATGAATCAGGATGGGACTATTGGTGTTAGTGCTCGAACG TGTAACATCATCTTAAGTGGATACCTGTCTTCTGGAAATCACTTAAAGGCAGAGAAGATCTATGACTTTATGTGCCAAAAAATGTATGAAATTGAAAGCC CGTTAATGGAAAAGCTTGACCTCATCCTGAGCTTGAGCAGGAAAATTATTAAAAAACCAATAAGCCTGAAGCTAAGCAAGGAGCAGAGGGAAATCTTAAT TGGGTTGCTTCTAGGTGGATTGAAGATTGATTCTGATGACAAAAGGAAGAATCATAGTATCCGTTTTGAATTTGATAGTAACTCTGACAGCCATAATGTC CTTAAAAGTAATGTACATCGCCAGTTTTATGAGTGGCTGCATCCTACTTGTAAGCCAAGCAATGACAGTGAGAATGTACCAGATAAGTTTTGTACCATTG CAAGCTCTAGTTTTGGCTTTTATGCAGATCAGTTTTGGTCAAACGGCCAACCTACAATTCCGAAACTTGTCCACAGATGGTTGTCACCGTGTGTTCTTGC GTACTGGTATATGTATGGGGGCCGTCGAAGTTCATCTGGGGATATTTTGCTCAAGATGAAGGGAAGTCCTGAGGGTGTTGAGAGCATTGTAAAGAAGTTT AAAGCCATGTCCATGGATTGTAAAGTCAAGAGGAAAGGCAAGCTATTTTGGATTGGTATTCTGGGAAGCAATTCGGCTTCGTTCTGGAAACTGATCGAAC CGTATATTTTAGATGTAAACGATTTTCCGGAAGTAGGTGATCAAACATTGGAACATGATTCAAGGGAAACTGAAAACATTAACTTCAATAGTGATTCAGA TTGACGAAAAGGGGTGATACCATGTTGATGGCCACGGTTTGGAGAAGTTTATGTTAGGTGTGTTTGCCCGACTAGATTATGCTTTTACAACTCTGGCTAG AGAACAAGTTTGATTTATGTACTACAGTGGTTCTTTTTGCTGAAGTGGCTACTATGGTTGCAAAATGAAGGTTTCTTGAATATTATGTGGTAACCATCCC TATGAAATACCGCAGTTGTTCATTTTAAATTTCCAATGCATAGAGAATGAGAGAGTAAGGACTTTATTGTATTATCGGGTTACTGTGCAAAAAGATATTA AAAATAGTGTTGTTAATTTTCTTGACTTAAACACTTTTGCATGGATGGTGATCTTCTTACAACGGTAAGTTTGTTGCTTAGTGACCATGAGGTCACAAGT TCAAATCTTAGAAACAACCTTTTCGTTTATA
• Tissue: pods
• Gene name: LI_gene_188920;
• Additional information: details;

Expression of Ll_transcript_399448

FPKM

• PAB: 1.1
• PNAB: 5.2
• PS1: 5.3
• PS2: 3.7
• PS3: 5.1
• PW1: 3.9
• PW2: 3.5
• PW3: 2.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_399448

• Blastp: Pentatricopeptide repeat-containing protein At2g15820, chloroplastic from Arabidopsis with 60.86% of identity
• Blastx: Pentatricopeptide repeat-containing protein At2g15820, chloroplastic from Arabidopsis with 60.71% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT2G15820)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461182.1)
• Pfam: PPR repeat (PF01535.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;