Ll_transcript_397467

• Id Trinity: TRINITY_DN51965_c1_g5_i3
• Name Transcript: Ll_transcript_397467
• Sequence: TATGAAATCACTCACTCTCACAGCTTCTGCAGCAAATTTGTTCCAATTAACGTTCACCAAAAACCCTAACCCTCTCTCTCACATTGTAGAAACTGAAAGT AACCCATCTTCTCACACTTGAAATCTCAGAATCTCTGCGTCCTTTTCTCAAACACCCTTTCTGCTAAAGTTTCCAAATTCACCATCAAAATTTGATTTTT TTTCATTCCACCATGGATGATCTCGAGAAAGCAATTCTCATCATGTTTGATGAATATGGTGCAATTGATAATGAGTTGAAGAAACATGCTCATAACTATT TAAACCAAATAAAGGAGAATAACATTTCAATTTGTAGATTATGCATTGAAAAACTATGCTTTTCAAATCTTGTTCAAGTTCAGTTTTGGTGCCTTCAAAC CTTACATGAAATGATCAAAGCATGTTATTTGTCAATGAAACCGGAAGAGATTTACATGATTAGAAGCTATGTGTTTTCCATTGTGTGTCTTGAACCTGTT GATGATAAGAATCTCAGAAGGGTTTTGGAAGGTCCTGCTTTTGTAAAGAACAAGCTTGCACAGGTTTTGACCACTTTGATTTACTTTGAGTACCCTTTAA TTTGGTCTTCGGTGTTTGTCGATTTTTTCCCGCATTTGAGCAAAGGGAATTTGGTTATAGATATGTTTTGTAGAGTCTTGAATGTGTTGGATGATGAGTT AATTAGTATGGATTACCCGCGAACCGCCAAGGAGTTGAGTGTTGCGGCGCGGGTTAAGGATGCAATTAGACAACAGTGTGTGTCTCAGATAGTGAGAGCT TGGTATGACATTGTGTCTATGTATAGGAATAATGATGCGGAGCTATGTGCTACTGTGTTAGATTCAATGAGGAGGTATATTTCTTGGATTGACATCGGGT TGATCGTGAATGATACTTTTATCCCTCTGTTATTTGATTTGGTTTTGGCTGGTGATCTGTCTGATTCGCTTCGTGGTGCTGCCGTCAGATGCTTGTTAGC AGTAGTTTCTAAGCGGATGGAGCCGGAATCGAAACTATCGTTGCTTCAAAATCTTCAAATTAGCCGTGTGTTTAGGTTGGTGGCAGAGGATGGTGACACT GAACTTGTTTCTGCTATATCTGCGTTGCTTACTGGCTATGCCGTGGAGGCCTTAGATTGCTTTAAACGTATAAATTCCGAGGATGCTAAAGGAGTCTCCA TGGAGCTTCTGAATGAAGTTTTACCCTCGGTTTTCTATGTCATGAAGAATTTTGAGTTAGATGCTACATTTAATGTCGTCCAGTTTCTATCGGGTTATGT CGCCACTTTGAAGAGCTTTGGTCCATTGAGAGATAAACAACTATTTCACGTAGGTCAGATATTGGAGGTTATCCTTGTCCTTACTCGATATGACCCTACA TACCGTGCTAATCTTGATGTGATTGACATAATTGGAAAAGAGGAGGAAGATAGGATGGTAGAGTTCAGAAAGGATTTATTTGTTCTGCTCCGCACCGTGG GCCGCGTAGCACCTGATGTAACTCACTTGTTTATCAGAAATTCAATAGCTAGTGCTGTTCACAGTTCCTCGGATAGCAATGTAGAGGAGGTGGAAGGTGC ACTCTCTCTTCTATATGCATTTGGAGAATCTTTGAGCGATGAAGCCATGAGAACAGGGAGTGGGTTGTTAAATGCGCTGGTGCTCACACTTCTATCAACG AAGTTTCCTTGTCACTCTAATAGGCTAGTTGCTCTTGTTTATTTGGAGACAGTGACAAGATATGTTAAATTCATACAGGATAATATTCAATATATTCCTA TAGTTCTCACCGTTTTTCTCGATGAAAGAGGCATACATCATCCTAACATCAATGTAAGCCGTAGGGCCAGCTATTTGTTTATGAGGGTCGTAAAATTGCT TCGGGTGAAATTGGTGCCTTTCATAGAGACAATTTTGCAGAGCCTGCAAGATACAGTTGCTCAATGCACACTTACAAATTCTGCAACCAAAGTGCTATCA GGGTCCGAAGATGGTAGCCACGTTTTTGAGGCAATTGGGTTATTGATTGGAATGGAAGATGTCCCGCCGGAAAAGCAATCTAATTATCTTTCTTCTTTGC TCAGACCTCTTTGTCAGCAGGTTGAGACGCTGCTCATAAATGCCAAATTATTGACTTATGAGGAGACTAACGCCAAAATTTCTATAGTCCAGCAAATTAT CATGGAAATTAATTCTCTCAGTAAGGGCTTCAGTGAGCGTCTTGTAACCACTAGTCGTCCTGCAATTGGTGTCATGTTTAAGCAGACATTGGATGTACTT CTCCAAGTTCTTGTTGTATTCCCAAAAGTAGAACCTCTCCGGAGCAAGGTCACATCTTTTATACACCGCATGGTGGATACACTAGGAGCATCTGTCTTTC CTTTCCTTCCGAAGGCATTGGAGCAAATGCTTGCTGAAACCCAGCCAAGGGAGATGATTGGTTTCCTTATGTTGCTCAATCAACTTATTTGTAAATTCAG TACTTCGGTGCATGCCATTGTAGAGGAAATATTCCCAGCTGTCGCTGATCGGATATTCAGCGTTATTCCAAGAGATGGATTACCTGCAGGGTCTGGTGCA GTCACTGAGGAAATTCGTGAATTGCAAGAACTTCAGCGGACATTGTATACATTTCTCCATGTAATCACTACACATGATCTGTCTTCTGTATTTATTACCC CAAAAAGTAAAGCATACTTGGATCCAGTGATGCAGTTGCTTTTGTACTCTTCTTGTAATCATAAGGATATTCTTGTAAGAAAGGCATGTGTACAGATTTT CACCAGACTAATTAAAGATTGGTGTGCCGAACCTTATGAGGAGAAGGTTCCAGGTTTTCGAACTTTCATGATTGAATCATTTGGAATAAACTGCTGTTTG TATAGTGTGTTGGACCGATCTTTTGAGCTCCGTGACACAAATACTTTTGTTTTGTTCGGAGATATTGTGTTGGCTCAAAAGGTCATGTATGAGAAGTTTG GGAATGATTTTCTTGTTCACTTTGTATCAAAAGGATTTTCTGCTGCACATTGCCCACCAGATCTGGCTGAACAATATAGTCAGAAGTTGCAGGGTAGTGA TATCAAGGCTCTAAAATCTTTCTACCAGTCACTTGTAGAAAATTTGAGATTGCAGCAGAACGGAAGTCTTGTTTTCAGATAGCATACTTATACGACAATA ACAACAACCGCAGCAACCAAGCCTTAGTCCCACTAGGGTGGCTTGTGTATATAGACTTTTGTGGATGTAC
• Tissue: pods
• Gene name: LI_gene_188959;
• Additional information: details;

Expression of Ll_transcript_397467

FPKM

• PAB: 0.2
• PNAB: 1.8
• PS1: 1.7
• PS2: 0.8
• PS3: 1.9
• PW1: 1.2
• PW2: 0.9
• PW3: 0.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_397467

• Blastp: Exportin-T from Arabidopsis with 69.8% of identity
• Blastx: Exportin-T from Arabidopsis with 69.8% of identity
• Eggnog: tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Involved in pre- tRNA splicing, probably by affecting the interaction of pre-tRNA with splicing endonuclease (By similarity)(ENOG410XZDZ)
• Kegg: Link to kegg annotations (AT1G72560)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019423350.1)
• Pfam: Exportin 1-like protein (PF08389.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;