| Id Trinity | TRINITY_DN51965_c1_g5_i7 |
|---|---|
| Name Transcript | Ll_transcript_397478 |
| Sequence | TATGAAATCACTCACTCTCACAGCTTCTGCAGCAAATTTGTTCCAATTAACGTTCACCAAAAACCCTAACCCTCTCTCTCACATTGTAGAAACTGAAAGT AACCCATCTTCTCACACTTGAAATCTCAGAATCTCTGCGTCCTTTTCTCAAACACCCTTTCTGCTAAAGTTTCCAAATTCACCATCAAAATTTGATTTTT TTTCATTCCACCATGGATGATCTCGAGAAAGCAATTCTCATCATGTTTGATGAATATGGTGCAATTGATAATGAGTTGAAGAAACATGCTCATAACTATT TAAACCAAATAAAGGAGAATAACATTTCAATTTGTAGATTATGCATTGAAAAACTATGCTTTTCAAATCTTGTTCAAGTTCAGTTTTGGTGCCTTCAAAC CTTACATGAAATGATCAAAGCATGTTATTTGTCAATGAAACCGGAAGAGATTTACATGATTAGAAGCTATGTGTTTTCCATTGTGTGTCTTGAACCTGTT GATGATAAGAATCTCAGAAGGGTTTTGGAAGGTCCTGCTTTTGTAAAGAACAAGCTTGCACAGGTTTTGACCACTTTGATTTACTTTGAGTACCCTTTAA TTTGGTCTTCGGTGTTTGTCGATTTTTTCCCGCATTTGAGCAAAGGGAATTTGGTTATAGATATGTTTTGTAGAGTCTTGAATGTGTTGGATGATGAGTT AATTAGTATGGATTACCCGCGAACCGCCAAGGAGTTGAGTGTTGCGGCGCGGGTTAAGGATGCAATTAGACAACAGTGTGTGTCTCAGATAGTGAGAGCT TGGTATGACATTGTGTCTATGTATAGGAATAATGATGCGGAGCTATGTGCTACTGTGTTAGATTCAATGAGGAGGTATATTTCTTGGATTGACATCGGGT TGATCGTGAATGATACTTTTATCCCTCTGTTATTTGATTTGGTTTTGGCTGGTGATCTGTCTGATTCGCTTCGTGGTGCTGCCGTCAGATGCTTGTTAGC AGTAGTTTCTAAGCGGATGGAGCCGGAATCGAAACTATCGTTGCTTCAAAATCTTCAAATTAGCCGTGTGTTTAGGTTGGTGGCAGAGGATGGTGACACT GAACTTGTTTCTGCTATATCTGCGTTGCTTACTGGCTATGCCGTGGAGGCCTTAGATTGCTTTAAACGTATAAATTCCGAGGATGCTAAAGGAGTCTCCA TGGAGCTTCTGAATGAAGTTTTACCCTCGGTTTTCTATGTCATGAAGAATTTTGAGTTAGATGCTACATTTAATGTCGTCCAGTTTCTATCGGGTTATGT CGCCACTTTGAAGAGCTTTGGTCCATTGAGAGATAAACAACTATTTCACGTAGGTCAGATATTGGAGGTTATCCTTGTCCTTACTCGATATGACCCTACA TACCGTGCTAATCTTGATGTGATTGACATAATTGGAAAAGAGGAGGAAGATAGGATGGTAGAGTTCAGAAAGGATTTATTTGTTCTGCTCCGCACCGTGG GCCGCGTAGCACCTGATGTAACTCACTTGTTTATCAGAAATTCAATAGCTAGTGCTGTTCACAGTTCCTCGGATAGCAATGTAGAGGAGGTGGAAGGTGC ACTCTCTCTTCTATATGCATTTGGAGAATCTTTGAGCGATGAAGCCATGAGAACAGGGAGTGGGTTGTTAAATGCGCTGGTGCTCACACTTCTATCAACG AAGTTTCCTTGTCACTCTAATAGGCTAGTTGCTCTTGTTTATTTGGAGACAGTGACAAGATATGTTAAATTCATACAGGATAATATTCAATATATTCCTA TAGTTCTCACCGTTTTTCTCGATGAAAGAGGCATACATCATCCTAACATCAATGTAAGCCGTAGGGCCAGCTATTTGTTTATGAGGGTCGTAAAATTGCT TCGGGTGAAATTGGTGCCTTTCATAGAGACAATTTTGCAGGTAGCAATTATCCAGTCCTATCCTTTTTCATGTTTTAAACTTTTTATGCATTTTAAATAT ACTTCTTTATATTTTATATACAAAATTTAATACGAACTGTTCTCGGCTTCCGTCATTTTTGTTTGCCCATCATTTGCATGGAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_188959; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_397478
| Blastp | Exportin-T from Arabidopsis with 68.75% of identity |
|---|---|
| Blastx | Exportin-T from Arabidopsis with 68.75% of identity |
| Eggnog | tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Involved in pre- tRNA splicing, probably by affecting the interaction of pre-tRNA with splicing endonuclease (By similarity)(ENOG410XZDZ) |
| Kegg | Link to kegg annotations (AT1G72560) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423350.1) |
| Pfam | Exportin 1-like protein (PF08389.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |