Ll_transcript_398866

• Id Trinity: TRINITY_DN51971_c2_g1_i24
• Name Transcript: Ll_transcript_398866
• Sequence: TCTTCATTTTTTATTAGAAATATCTAATTTCTTGAGTCATCACCATGGCCATCAATACCAACTCTAATTTCACGTTTTCTAAATTCTTTTTTGATTTCCC CAAATATGTACAAATCCCTAACCTGTGAGTTTTTCCTCTCCTTTCTCATTTATGGTTCATACAAGTTTCAATTCAGATTTGATTTACAATTTTTTTCATT TTGTTTATTTGCATTACACTTATAATGATCATTTTTTAAACCCTAACCATTCTTCAAAAGCATGGAGCTTAGCTGTATTTGTGAGAATTTTTGTAATTCG ATCTAGATCTGTAATTTGTGTGAGTATTATTGTGAGAATTTCTGGTTTGAATCCAAATCTGAGTTTGATAGTAATTTTGGTGTGAGTGGTGTTTTTACTA GATGAAGTTAAAATGTTGGATTGTTTTTTCTATTGCTTCCTCCTTTCTCCTTTGCAAAGTCTTCACTATTAATTTTTTAATTTCTTATGTCATGCTATGT TGGATAAACATAAATAGTTTACCATTAGGCTATACTTATGCTTAAACAAGTCCATTACTGAAAGATGAGCCCTTCAAGGAGATTTGCAAGTCCAAGGATA GTCTCTTATTATATTTGATCAACTACCTCTAAAGTATGAGTTTTATTTATAAAATGTCAACTCCCACAATGATAATTATGAACTTCATCATTCTGAACAA TGATGAAATTTTGAAGTTCACATATATTTTTGCTCAAATTTTAGTTGGGTGATGTATTTTTTCATTGTTATCCTTTAAAATAGTGTCTACATTAAACTAG CTTTTTAATTTTGAAATATATGCTCACTTTACTTTAAATTACTTATTTTCCAAATGTTGCACATTCATTGTTCTCTTGGACATCACCAAGAGCTATTGTC ATGTGGTAAGTCTTGCTTATTGACAAATTGATTAATGGTGAGGTGAAAGGGAGAAGGGAATGTCATTGGGATTGCAGAGTCCTAAACTGGATGGAGGCTT TTGAATATGCCATTTGATGGATGCATTCTTAGTTATTGGGTTCCATTTGAGGCATTGCTTTTGAATGATGATGCAGACAGGCTTACGAAGATGGTACAAG AAATCTAGGGAATGGGATTTTTAGCAGGTCTGTTGCTTCTTTATATGAGTGAGGAGGATGCATTTTGGTTGTTGGTTGCATTGCTGAAAGGAGCTGTTCA TGCTCCAATGGAGGGCTTGTATCTGGCAGGATTGCCTCTGGTACAGCAATACCTCTCTCAATTTGAACAATTGGTGAGGGAGCATCTACCGAAATTAGGA GAACATTTTTCACAAGAAATGATAAATCCTAGCATGTATGCAAGCCAGTGGTTCATAACTGTATTTTCATACTCTTTTCCGTTCCATTTAGCTCTTCGAA TTTGGGATGTCTTTCTCTACGAGGTTAGCAGCACTTCTCCTTATAAAAACCCTTGGTGTAAAATTCTCATGGCCGTTGGTATATATAGTGCGATAAAGGT GTGGTTGTTGTTATTATATATATATATTGACAATGTTTTTGTCGTTCCAGGGTGTGAAAATTGTCTTTAAAGTTGGGTTGTCCCTATTAAAGTATTGTCA TGATGACTTGGTTAAACTACCTTTCGAGAAACTCTTACAAGCCTTGAAAAACTTCCCCGAGGATGCAATGGATCCGGATACGATATTGCCCCTGGCTTAT TCAATTAAGGTACTCTTCCTTTCTATGGATTTGATAGAGATACCACAGAATAGTTTCTCATACTATAACAAGTATTGTGAAGTTTATGTCCAACGCGAGT CCACCCGATAAATAGGCATGTTTAGACTCTTAAAAGTCCTTTCGAATAGATCATCGGACTATAATAGGCTGCGAGCCCACTAGGCTTTGGGCCGGTCCAC TCATATCACATCTAGTTGATCCTACCTAATGAGACTAAGGCTCAGTTGTCGTTGTCGTAACTTGTTCCTATAGAATAGAATATAAACACTCACACTTCGG GTGCTTAGCTCTATTAGTTCTTGCCATAGATTAATGGAATAAGTTGTTTTACATAATGGAGATTCCAATAATGCATGATGTGATTAGATTTTATAATACA TTGACACATGAACCATAACTTTATGTTCATAACCATAGTAGTTAAAATCAAGATTCTACTTAGGATCAGGAGGGAAGTCAAGGATCGTAAACGTAGAATT GTAACACGACTCGTAACTGTTCCATGATTATGTATCATCTTATTTTTGGTTTTTATTGATAGATATCTAAGCGTTTAGAGGAA
• Tissue: pods
• Gene name: LI_gene_189000;
• Additional information: details;

Expression of Ll_transcript_398866

FPKM

• PAB: 0.1
• PNAB: 0.2
• PS1: 0.2
• PS2: 0.1
• PS3: 0.2
• PW1: 0
• PW2: 0.2
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_398866

• Blastp: USP6 N-terminal-like protein from Mus with 40.38% of identity
• Blastx: Ecotropic viral integration site 5 protein homolog from Homo with 39.78% of identity
• Eggnog: TBC1 domain family member(COG5210)
• Kegg: Link to kegg annotations (98910)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019453278.1)
• Pfam: Rab-GTPase-TBC domain (PF00566.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;