| Id Trinity | TRINITY_DN51971_c2_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_398847 |
| Sequence | TCTTCATTTTTTATTAGAAATATCTAATTTCTTGAGTCATCACCATGGCCATCAATACCAACTCTAATTTCACGTTTTCTAAATTCTTTTTTGATTTCCC CAAATATGTACAAATCCCTAACCTGTGAGTTTTTCCTCTCCTTTCTCATTTATGGTTCATACAAGTTTCAATTCAGATTTGATTTACAATTTTTTTCATT TTGTTTATTTGCATTACACTTATAATGATCATTTTTTAAACCCTAACCATTCTTCAAAAGCATGGAGCTTAGCTGTATTTGTGAGAATTTTTGTAATTCG ATCTAGATCTGTAATTTGTGTGAGTATTATTGTGAGAATTTCTGGTTTGAATCCAAATCTGAGTTTGATAGTAATTTTGGTGTGAGTGGTGTTTTTACTA GATGAAGTTAAAATGTTGGATTGTTTTTTCTATTGCTTCCTCCTTTCTCCTTTGCAAAGTCTTCACTATTAATTTTTTAATTTCTTATGTCATGCTATGT TGGATAAACATAAATAGTTTACCATTAGGCTATACTTATGCTTAAACAAGTCCATTACTGAAAGATGAGCCCTTCAAGGAGATTTGCAAGTCCAAGGATA GTCTCTTATTATATTTGATCAACTACCTCTAAAGTATGAGTTTTATTTATAAAATGTCAACTCCCACAATGATAATTATGAACTTCATCATTCTGAACAA TGATGAAATTTTGAAGTTCACATATATTTTTGCTCAAATTTTAGTTGGGTGATGTATTTTTTCATTGTTATCCTTTAAAATAGTGTCTACATTAAACTAG CTTTTTAATTTTGAAATATATGCTCACTTTACTTTAAATTACTTATTTTCCAAATGTTGCACATTCATTGTTCTCTTGGACATCACCAAGAGCTATTGTC ATGTGGTAAGTCTTGCTTATTGACAAATTGATTAATGGTGAGGTGAAAGGGAGAAGGGAATGTCATTGGGATTGCAGAGTCCTAAACTGGATGGAGGCTT TTGAATATGCCATTTGATGGATGCATTCTTAGTTATTGGGTTCCATTTGAGGCATTGCTTTTGAATGATGATGCAGACAGGCTTACGAAGATGGTACAAG AAATCTAGGGAATGGGATTTTTAGCAGGTCTGTTGCTTCTTTATATGAGTGAGGAGGATGCATTTTGGTTGTTGGTTGCATTGCTGAAAGGAGCTGTTCA TGCTCCAATGGAGGGCTTGTATCTGGCAGGATTGCCTCTGGTACAGCAATACCTCTCTCAATTTGAACAATTGGTGAGGGAGCATCTACCGAAATTAGGA GAACATTTTTCACAAGAAATGATAAATCCTAGCATGTATGCAAGCCAGTGGTTCATAACTGTATTTTCATACTCTTTTCCGTTCCATTTAGCTCTTCGAA TTTGGGATGTCTTTCTCTACGAGGTTAGCAGCACTTCTCCTTATAAAAACCCTTGGTGTAAAATTCTCATGGCCGTTGGTATATATAGTGCGATAAAGGT GTGGTTGTTGTTATTATATATATATATTGACAATGTTTTTGTCGTTCCAGGGTGTGAAAATTGTCTTTAAAGTTGGGTTGTCCCTATTAAAGTATTGTCA TGATGACTTGGTTAAACTACCTTTCGAGAAACTCTTACAAGCCTTGAAAAACTTCCCCGAGGATGCAATGGATCCGGATACGATATTGCCCCTGGCTTAT TCAATTAAGATATCTAAGCGTTTAGAGGAACTGACACAAGAGTATGAGAAGAAGAATGGAAAGGTGGTTCAATCTGAAGAGCTTTCAGAGAAGCATAAGT TCCAAGAATCTAAGGCAACTGAAACATGATTATAAACTCATACCCTCAGATTCTATATTTTTATTCAAATTGTGTCTATATGTTGCTCATTGAATTTGTG TAGTTTTGAGTGGAATATTATAAGGGTATTCTGACCTTTCTTCATCATATCTGAAATTTTTTAACCCAAAAAATCCCAAAAAAATTCCAGACCTGTTCCT CTCTCTCATTATCGTGTGAACTCTCCGGTACCGAAGAGGAATCCGATTTGGTTAGCCAAGTTGTGCTATGTGTTAAATCCACTTGTATTCAATGGTTTGT GAATGGGTAAATAATGGGTGGCACATTAAATATTGTCCTTATAATTATTAATTGATTTGTTAGACAAAATAATAAAATTATCTTTTATTTGTTTTGATGC AATTATAGTGTATAAAATTCATACAATGTCATTGTTAGTGTACACGTTTTTTACTCTTTCGATTTATCAACA BLAST |
| Tissue | pods |
| Gene name | LI_gene_189000; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_398847
| Blastp | USP6 N-terminal-like protein from Mus with 40.38% of identity |
|---|---|
| Blastx | Ecotropic viral integration site 5 protein homolog from Homo with 39.78% of identity |
| Eggnog | TBC1 domain family member(COG5210) |
| Kegg | Link to kegg annotations (98910) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453278.1) |
| Pfam | Rab-GTPase-TBC domain (PF00566.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |