| Id Trinity | TRINITY_DN51980_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_399263 |
| Sequence | CGCGTTAAAAGTTCAAACGACGGTGAACCTCATTTTCTGAACTCCCATACTCTGCTCTTCTCTTCACACAACTCACTCGCCATGGATGATAGCTTGTACG ACGAGTTCGGTAACTACATCGGACCAGAAATTGACTCCGATTTTGACTCCGACAGAGAAGAAGACAATGACGACGACGGCGAAGATACCAGAGATAGACT CACCAACAACCACGACGGCGCCGCCTCCGACGGTGAGGGCCCCGCCAACGGCTGGATCACAACCTCAAATGACATCGACATGGTGGACAACCAGGTCGTA CTTGCAGAAGACAAGAAGTACTATCCCACCGCGGAAGAGGTTTACGGCGAAGACGTTGAAACCCTAGTTATGGACGAAGATGAACAATCCCTAGAGCAAC CAATTATCAAACCCGTTAGGAACATCAAATTCGAAGTTGGAGTGAAAGATTCATCGACCTATGTATCTTCTCAGTTTCTACTTGGTCTCATGTCAAACCC TACTTTGGTGAGGAACGTTGCGCTTGTTGGGAACTTGCAGCATGGGAAGACGATGTTCATGGATATGCTGGTTGAGCAGACGCATCGTATGTGTACGTTT GATCCGCAGAGTGAGAAGCATATGAGGTATACTGATACAAGGGTTGATGAACAGGAGAGGCGGATTTCGATTAAGGCGGTTCCGATGTCGCTTGTGATGG AAGACAGTAATTCTAAGTCTTATTTGTGTAACATTATGGATACACCAGGTCATGTCAATTTCTCCGATGAAATGACCGCGGCTTTGAGGCTTGCTGATGG TGCTGTGTTGATTGTGGATGCTGCTGAAGGAGTCATGGTTAACACAGAGAGGGCAATACGCCATGCCATCCAGGAGCGACTGCCTATTGTTGTTGTAATG AATAAGGTTGACAGGCTTATAACTGAACTTAAATTACCTCCTAAAGATGCTTACCATAAAATAAGGCATACATTGGAAGTGATCAATAACCATATATCTG CTGCCTCTTCAATTGCTGGTGATGTCCAAGTTATAGACCCAGTTGCTGGAAATGTTTGTTTTGCAAGTGGTACTGCAGGATGGTCCTTTACATTACAATC ATTTGCTAAACTATATGGGAAGATACATGGCATTCCGTTGGAAGCTAATAAATTTGCTTCTCGTTTGTGGGGAGACTTCTATTATCATCCAGATACTAGA ACCTTCAAAAAGAAACCCCCTGCCAGTGGAGCTGAGCGATCTTTTGTTGAGTTTGTGTTGGAACCACTCTACAAGATATATAGCCAAGTTATTGGGGAAC ATAAGAAGAGTTTAGAGACAACTCTTGCAGAACTTGGAGTCACTCTAAGTAATGCAGCCTATAGATTAAATGTTAGACCTTTGCTAAGGCTGGCTTGTAG CTCAATATTTGGTGCAGCTTCAGGTTTCACTGATATGCTTGTTCAGCATATACCTTCCCCAAGAGATGCTGCAATTAAGAAAGTTGATCACATATACACC GGCCCTAAAGATTCGGTCATTTACAAAGCCATGTCACAGTGCGATTCTTCTGGGCCCTTAATGGTTAACGTAACCAAACTGTATCCAAAATCGGATTGCA GCGTGTTTGATGTTTTTGGTAGAGTGTATAGTGGCAAGATACAGACAGGACAGACTGTACGTGTTCTAGGAGAAGGATACTCGCCAGATGACGAGGAGGA CATGACTGTAAAAGAAGTGACAAAGTTGTGGGTGTATCAAGCTAGAGATAGGATGCCAATAGCTGAGGCTCCTCCTGGTTCTTGGGTTCTCATTGAAGGT GTAGATGCTTCCATCATGAAAACTGCCACTATCTGTAATGTGGATTATGATGAGGATGTATATATATTCCGGCCTCTTCAATTCAATACTCTGTCAGTGG TAAAAACAGCTACTGAGCCATTAAATCCAAGTGAGTTGCCAAAAATGGTAGAGGGATTGAGGAAGATAAGCAAGAGTTATCCTCTGGCAGTTACTAAAGT TGAGGAGTCTGGGGAACACACTATATTGGGGACTGGTGAATTGTACTTGGATTCAATTATGAAGGATCTTAGAGAGCTCTATTCTGAAGTTGAAGTCAAG GTGGCTGATCCTGTTGTCTCGTTTTGTGAAACTGTTGTTGAATCTTCATCAATGAAATGTTTTGCCGAGACACCAAACAAGAAGAATAAAATAACTATGA TTGCCGAGCCACTAGAAAGAGGTCTTGCTGAGGACATAGAGAATGGTGTTGTTAGCACTGACTGGAATAGAAAGAAACTTGGTGAATTTTTTCAGACCAA GTATGACTGGGATCTCCTTGCTGCACGGTCAATCTGGGCATTTGGCCCTGATAAGCAGGGGCCAAATATTCTGTTAGATGACACCCTTCCCACTGAAGTT GACAAGAACCTTTTGAATGCTGTAAAGGATTCCATTGTTCAGGGATTTCAGTGGGGTGCACGAGAGGGACCTCTATGTGATGAACCCATCAGAAATGTTA AGTTCAAGATTGTTGATGCAAGAATTGCCCCTGAACCACTTCATCGGGGATCTGGCCAGATCATTCCAACAGCACGACGGGTGGCCTACTCTTCTTTCCT TATGGCTACCCCCAGGCTTATGGAACCAGTATATTATGTAGAGATACAAACGCCTATAGACTGTGTATCTGCAATATACACTGTGCTATCTCGTAGACGT GGACATGTTACTGCTGATGTTCCTCAACCAGGCACGCCAGCTTATATTGTTAAGGCATTTTTGCCCGTGATAGAATCTTTTGGTTTTGAGACAGACTTGA GATACCATACCCAAGGTCAAGCATTTTGCCTCTCAGTTTTTGATCATTGGGCTATTGTTCCTGGAGATCCTCTGGACAAAAATATTGTTTTACGGCCCCT TGAACCAGCACCAATCCAGCATCTTGCTCGTGAGTTTATGGTGAAAACAAGACGTAGAAAGGGAATGAGTGAAGATGTAAGCATAGGTAAGTTCTTCGAT GAGGCTATGATGGTGGAACTGGCACAGCAGGCGGCAGATCTTCATCAACAAATGATGTGATTCTTTAAAAAAAGCTTCTATGTCAATTTGACCATTTTGT ATTTTTCTGAAGTTTCCTTGGGCTGTTCCATTACGAAACTGGAAACAAGTTATGTGATGCAAGAAAAATCTGGAAGTTCTTTGCTTTGTGAGTTGGCTAG GGTATGTCATTTCAATTCCAGGTACTGGTGTTAGCACCTACGCCCTTAGAAGTAGTCTCCTATCTCCAAAGTGAAAAAAGTTTTTTTTCTTCTTTTGAGC ATCTTAGTTTGTAGACTGTACTTTATGCATTGCTAGAATCTATTGTAGTGTTAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_189078; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_399263
| Blastp | 110 kDa U5 small nuclear ribonucleoprotein component CLO from Arabidopsis with 84.55% of identity |
|---|---|
| Blastx | 110 kDa U5 small nuclear ribonucleoprotein component CLO from Arabidopsis with 85.38% of identity |
| Eggnog | Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity)(COG0480) |
| Kegg | Link to kegg annotations (AT1G06220) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019463083.1) |
| Pfam | 116 kDa U5 small nuclear ribonucleoprotein component N-terminus (PF16004.4) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |