Ll_transcript_399267

• Id Trinity: TRINITY_DN51980_c0_g1_i7
• Name Transcript: Ll_transcript_399267
• Sequence: CGCGTTAAAAGTTCAAACGACGGTGAACCTCATTTTCTGAACTCCCATACTCTGCTCTTCTCTTCACACAACTCACTCGCCATGGATGATAGCTTGTACG ACGAGTTCGGTAACTACATCGGACCAGAAATTGACTCCGATTTTGACTCCGACAGAGAAGAAGACAATGACGACGACGGCGAAGATACCAGAGATAGACT CACCAACAACCACGACGGCGCCGCCTCCGACGGTGAGGGCCCCGCCAACGGCTGGATCACAACCTCAAATGACATCGACATGGTGGACAACCAGGTCGTA CTTGCAGAAGACAAGAAGTACTATCCCACCGCGGAAGAGGTTTACGGCGAAGACGTTGAAACCCTAGTTATGGACGAAGATGAACAATCCCTAGAGCAAC CAATTATCAAACCCGTTAGGAACATCAAATTCGAAGTTGGAGTGAAAGATTCATCGACCTATGTATCTTCTCAGTTTCTACTTGGTCTCATGTCAAACCC TACTTTGGTGAGGAACGTTGCGCTTGTTGGGAACTTGCAGCATGGGAAGACGATGTTCATGGATATGCTGGTTGAGCAGACGCATCGTATGTGTACGTTT GATCCGCAGAGTGAGAAGCATATGAGGTATACTGATACAAGGGTTGATGAACAGGAGAGGCGGATTTCGATTAAGGCGGTTCCGATGTCGCTTGTGATGG AAGACAGTAATTCTAAGTCTTATTTGTGTAACATTATGGATACACCAGGTCATGTCAATTTCTCCGATGAAATGACCGCGGCTTTGAGGCTTGCTGATGG TGCTGTGTTGATTGTGGATGCTGCTGAAGGAGTCATGGTTAACACAGAGAGGGCAATACGCCATGCCATCCAGGAGCGACTGCCTATTGTTGTTGTAATG AATAAGGTTGACAGGCTTATAACTGAACTTAAATTACCTCCTAAAGATGCTTACCATAAAATAAGGCATACATTGGAAGTGATCAATAACCATATATCTG CTGCCTCTTCAATTGCTGGTGATGTCCAAGTTATAGACCCAGTTGCTGGAAATGTTTGTTTTGCAAGTGGTACTGCAGGATGGTCCTTTACATTACAATC ATTTGCTAAACTATATGGGAAGATACATGGCATTCCGTTGGAAGCTAATAAATTTGCTTCTCGTTTGTGGGGAGACTTCTATTATCATCCAGATACTAGA ACCTTCAAAAAGAAACCCCCTGCCAGTGGAGCTGAGCGATCTTTTGTTGAGTTTGTGTTGGAACCACTCTACAAGATATATAGCCAAGTTATTGGGGAAC ATAAGAAGAGTTTAGAGACAACTCTTGCAGAACTTGGAGTCACTCTAAGTAATGCAGCCTATAGATTAAATGTTAGACCTTTGCTAAGGCTGGCTTGTAG CTCAATATTTGGTGCAGCTTCAGGTTTCACTGATATGCTTGTTCAGCATATACCTTCCCCAAGAGATGCTGCAATTAAGAAAGTTGATCACATATACACC GGCCCTAAAGATTCGGTCATTTACAAAGCCATGTCACAGTGCGATTCTTCTGGGCCCTTAATGGTTAACGTAACCAAACTGTATCCAAAATCGGATTGCA GCGTGTTTGATGTTTTTGGTAGAGTGTATAGTGGCAAGATACAGACAGGACAGACTGTACGTGTTCTAGGAGAAGGATACTCGCCAGATGACGAGGAGGA CATGACTGTAAAAGAAGTGACAAAGTTATGGGTGTATCAAGCTAGAGATAGGATGCCAATAGCTGAGGCTCCTCCTGGTTCTTGGGTTCTAATTGAAGGT GTTGATGCCTCGATCATGAAAACTGCCACTCTTTGTAATGTGGATTATGATGAGGATGTATATATATTCCGACCTCTTCAGTTCAATACTCTGTCAGTGG TAAAAACAGCTACTGAGCCATTAAATCCAAGTGAGTTGCCAAAAATGGTGGAGGGCCTAAGGAAAATCAGCAAAAGTTATCCTCTTGCAGTTACTAAAGT TGAGGAGTCTGGGGAACACACTATATTAGGGACTGGTGAACTGTACTTGGATTCAATTATGAAGGACCTTAGAGAGCTGTATTCTGAGGTTGAAGTCAAG GTGGCTGATCCTGTTGTTTCGTTTTGTGAAACTGTTGTCGAGTCTTCATCAATGAAATGTTTTGCTGAGACACCAAACAAGAAGAATAAAATAACCATGA TTGCTGAGCCACTAGAAAGAGGTCTTGCTGAGGACATAGAGAATGGTGTTGTTAGCACTGACTGGAATAGAAAGAAACTTGGTGAATTTTTCCAGACTAA GTATGACTGGGATCTCCTTGCTGCACGGTCAATCTGGGCATTTGGCCCTGATAAGCAGGGCCCCAATATTCTGTTAGATGACACCCTTCCCACTGAAGTT GACAAGAACCTGCTGAATGCTGTAAAAGATTCCATTGTTCAGGGATTTCAGTGGGGTGCACGAGAGGGACCTCTCTGTGATGAGCCCATCAGAAACGTTA AGTTCAAGATTGTTGATGCAAAGATAGCCCCTGAACCACTTCATCGGGGATCTGGCCAGATCATTCCAACAGCACGACGAGTGGCCTATTCTTCTTTCCT TATGGCTACCCCTCGGCTTATGGAACCTGTATATTATGTGGAGATTCAAACACCCATAGACTGTGTATCTGCAATATACACTGTGCTATCTCGTAGACGT GGACATGTTACTGCTGATGTTCCTCAACCTGGCACTCCTGCTTATATTGTTAAGGCATTTTTGCCCGTGATAGAATCTTTTGGTTTTGAGACAGACTTGA GATACCATACCCAAGGTCAAGCGTTTTGCCTATCAATTTTTGATCATTGGGCTATTGTTCCCGGAGATCCCCTGGACAAAAGTATTGTTTTGCGCCCACT TGAACCAGCGCCAATTCAGCATCTTGCTCGTGAGTTTATGGTAAAAACAAGGCGTAGAAAGGGAATGAGTGAAGACGTAAGCATAGGTAAATTCTTCGAT GAGGCTATGATGGTGGAACTGGCACAGCAGGCGGCAGATCTTCATCAACAAATGATGTGATTCTTTAAAAAAAGCTTCTATGTCAATTTGACCATTTTGT ATTTTTCTGAAGTTTCCTTGGGCTGTTCCATTACGAAACTGGAAACAAGTTATGTGATGCAAGAAAAATCTGGAAGTTCTTTGCTTTGTGAGTTGGCTAG GGTATGTCATTTCAATTCCAGGTACTGGTGTTAGCACCTACGCCCTTAGAAGTAGTCTCCTATCTCCAAAGTGAAAAAAGTTTTTTCTCCACAGTGGAGC ATCTTTGTTTGTAGACTGTACTTTATGCATTGCTAGAATCTATTGTAGTGTTATTACAAACCATGTCTGGAGAAAATTTCTATTGTTTACCAAAATGTGG GTGTCTCCAATTTAATATTTACCAAGATATTATCTAGTCCTGTAAAAGTGGATTGAAGACTTTGTTATACGTTTGGGTCAGCATTTGATTACAAAGATTC TCATTTTATGGAAATGTATCCCATTTTCAATGTTAATCAAGGTTCTCCTTCGTCAGAG
• Tissue: pods
• Gene name: LI_gene_189078;
• Additional information: details;

Expression of Ll_transcript_399267

FPKM

• PAB: 1.9
• PNAB: 17.1
• PS1: 17.6
• PS2: 8.5
• PS3: 12.2
• PW1: 14.9
• PW2: 11
• PW3: 7.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_399267

• Blastp: 110 kDa U5 small nuclear ribonucleoprotein component CLO from Arabidopsis with 84.45% of identity
• Blastx: 110 kDa U5 small nuclear ribonucleoprotein component CLO from Arabidopsis with 85.28% of identity
• Eggnog: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity)(COG0480)
• Kegg: Link to kegg annotations (AT1G06220)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019463083.1)
• Pfam: 116 kDa U5 small nuclear ribonucleoprotein component N-terminus (PF16004.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;