Ll_transcript_399268

• Id Trinity: TRINITY_DN51980_c0_g1_i8
• Name Transcript: Ll_transcript_399268
• Sequence: TGTTGCCCTAGAACCCGAAAATCCTCAACCGCCTTCAAAGACGGTGAGCTTCACTCTCTTCCACTTTCCTCTGTTCTTCTTCCATTTCAACACTATCACA ACATGGACGATAGCTTATACGACGAATTCGGCAACTACATCGGACCCGAAATTGACTCCGATATTGATTCCGATAGGGAAGAAGACAATGACGACGACGA CGACCAAGACAGGCTCACCAACCACCGCGACGGCGGCGCCTCCGACGACGACGGTCCCAACAATGGCTGGATCACCACCTCCAACGACGTCGACATGGTG GACAACCAGGTCGTGCTCGCGGAGGACAAGAAGTACTACCCCACCGCCGAAGAGGTTTATGGTGAAGACGTTGAAACCCTAGTTATGGACGAAGATGAAC AATCCCTAGAGCAACCAATAATCAAACCCGTTCGGAACATCAAATTCGAAGTTGGAGTGAAAGATTCAACCGCATACGTGTCTTCTCAGTTTCTACTTGG CCTAATGTCAAACCCTACTCTGGTCAGAAACGTTGCGCTTGTTGGGAACTTGCAGCATGGAAAAACGGTGTTCATGGATATGCTTGTGGAACAAACGCAT CATATGTGTACTTTTGATCCGCAGAGTGAGAAGCATATGAGGTATACTGATACTAGGATTGATGAACAAGAACGGAGGATTTCGATTAAAGCGGTTCCGA TGTCTCTCGTGATGGAGGATAGTAATTCTAAGTCTTATTTATGTAACATTATGGATACACCTGGCCATGTTAATTTCTCTGATGAAATGACGGCTGCGTT GAGGCTTGCTGATGGCGCTGTGTTGATTGTCGACGCTGCTGAAGGAGTCATGGTTAACACAGAGAGGGCGATACGCCATGCAATCCAGGAGCGACTGCCT ATTGTCGTTGTCATCAATAAGGTTGACAGGCTCATAACTGAACTTAAACTGCCTCCAAAAGATGCTTACCATAAAATAAGGCATACACTGGAAGTGATCA ACAACCATATATCTGCTGCATCCTCAATTGCTGGAGATGTCCAAGTTATAGACCCAGTTGCTGGAAATGTTTGTTTTGCAAGTGGTACTGCGGGATGGTC CTTTACATTGCAATCATTTGCTAAACTATATGGGAAGATACATGGCATTCCTCTGGAAGCTAACAAATTTGCTTCTCGTCTTTGGGGAGACTTCTATTAT CATCCAGATACCAGAACCTTCAAAAAGAAACCTGCTGCCAGTGGAGGAGAACGATCTTTTGTTGAGTTTGTGCTGGAACCACTCTACAAGATATATAGCC AAGTCATTGGGGAGCATAAGAAGAGTGTAGAAACAACTCTTGCAGAACTTGGAGTCACCCTCAGTAATGCAGCTTATAGATTGAATGTTAGACCTTTGCT AAGGTTGGCTTGCAGCTCAGTTTTTGGTGGAGCTTCAGGTTTCACCGATATGCTTGTTCAGCATATTCCTTCACCAAGAGATGCTGCAATTAAGAAAGTT GACCACATATATACTGGGCCCAAAGACTCAACCATCTACAAAGCCATGTCTCAGTGTGATTCTTTTGGGCCCTTAATGGTTAATGTGACCAAATTGTACC CAAAATCTGATTGCAGTGTGTTTGATGTTTTTGGTAGAGTGTATAGTGGCAAGATACAGACAGGACAGACGGTACGTGTTCTAGGAGAAGGGTATTCGCC GGATGATGAGGAGGACATGACTGTAAAAGAAGTGACAAAGTTGTGGGTGTATCAAGCTAGAGATAGGATGCCAATAGCTGAGGCTCCTCCTGGTTCTTGG GTTCTCATTGAAGGTGTAGATGCTTCCATCATGAAAACTGCCACTATCTGTAATGTGGATTATGATGAGGATGTATATATATTCCGGCCTCTTCAATTCA ATACTCTGTCAGTGGTAAAAACAGCTACTGAGCCATTAAATCCAAGTGAGTTGCCAAAAATGGTAGAGGGATTGAGGAAGATAAGCAAGAGTTATCCTCT GGCAGTTACTAAAGTTGAGGAGTCTGGGGAACACACTATATTGGGGACTGGTGAATTGTACTTGGATTCAATTATGAAGGATCTTAGAGAGCTCTATTCT GAAGTTGAAGTCAAGGTGGCTGATCCTGTTGTCTCGTTTTGTGAAACTGTTGTTGAATCTTCATCAATGAAATGTTTTGCCGAGACACCAAACAAGAAGA ATAAAATAACTATGATTGCCGAGCCACTAGAAAGAGGTCTTGCTGAGGACATAGAGAATGGTGTTGTTAGCACTGACTGGAATAGAAAGAAACTTGGTGA ATTTTTTCAGACCAAGTATGACTGGGATCTCCTTGCTGCACGGTCAATCTGGGCATTTGGCCCTGATAAGCAGGGGCCAAATATTCTGTTAGATGACACC CTTCCCACTGAAGTTGACAAGAACCTTTTGAATGCTGTAAAGGATTCCATTGTTCAGGGATTTCAGTGGGGTGCACGAGAGGGACCTCTATGTGATGAAC CCATCAGAAATGTTAAGTTCAAGATTGTTGATGCAAGAATTGCCCCTGAACCACTTCATCGGGGATCTGGCCAGATCATTCCAACAGCACGACGGGTGGC CTACTCTTCTTTCCTTATGGCTACCCCCAGGCTTATGGAACCAGTATATTATGTAGAGATACAAACGCCTATAGACTGTGTATCTGCAATATACACTGTG CTATCTCGTAGACGTGGACATGTTACTGCTGATGTTCCTCAACCAGGCACGCCAGCTTATATTGTTAAGGCATTTTTGCCCGTGATAGAATCTTTTGGTT TTGAGACAGACTTGAGATACCATACCCAAGGTCAAGCATTTTGCCTCTCAGTTTTTGATCATTGGGCTATTGTTCCTGGAGATCCTCTGGACAAAAATAT TGTTTTACGGCCCCTTGAACCAGCACCAATCCAGCATCTTGCTCGTGAGTTTATGGTGAAAACAAGACGTAGAAAGGGAATGAGTGAAGATGTAAGCATA GGTAAGTTCTTCGATGAGGCTATGATGGTGGAACTGGCACAGCAGGCGGCAGATCTTCATCAACAAATGATGTGATTCTTTAAAAAAAGCTTCTATGTCA ATTTGACCATTTTGTATTTTTCTGAAGTTTCCTTGGGCTGTTCCATTACGAAACTGGAAACAAGTTATGTGATGCAAGAAAAATCTGGAAGTTCTTTGCT TTGTGAGTTGGCTAGGGTATGTCATTTCAATTCCAGGTACTGGTGTTAGCACCTACGCCCTTAGAAGTAGTCTCCTATCTCCAAAGTGAAAAAAGTTTTT TCTCCACAGTGGAGCATCTTTGTTTGTAGACTGTACTTTATGCATTGCTAGAATCTATTGTAGTGTTATTACAAACCATGTCTGGAGAAAATTTCTATTG TTTACCAAAATGTGGGTGTCTCCAATTTAATATTTACCAAGATATTATCTAGTCCTGTAAAAGTGGATTGAAGACTTTGTTATACGTTTGGGTCAGCATT TGATTACAAAGATTCTCATTTTATGGAAATGTATCCCATTTTCAATGTTAATCAAGGTTCTCCTTCGTCAGAG
• Tissue: pods
• Gene name: LI_gene_189078;
• Additional information: details;

Expression of Ll_transcript_399268

FPKM

• PAB: 1.7
• PNAB: 12.9
• PS1: 9.8
• PS2: 9.1
• PS3: 9.2
• PW1: 8.9
• PW2: 6
• PW3: 4.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_399268

• Blastp: 110 kDa U5 small nuclear ribonucleoprotein component CLO from Arabidopsis with 88% of identity
• Blastx: 110 kDa U5 small nuclear ribonucleoprotein component CLO from Arabidopsis with 85.86% of identity
• Eggnog: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (By similarity)(COG0480)
• Kegg: Link to kegg annotations (AT1G06220)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019441022.1)
• Pfam: 116 kDa U5 small nuclear ribonucleoprotein component N-terminus (PF16004.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;