| Id Trinity | TRINITY_DN51985_c0_g1_i18 |
|---|---|
| Name Transcript | Ll_transcript_399183 |
| Sequence | CGCATTCGAAATAGATATTTCCTTCTTCGTTTTTTCCACCTTTTCATATTAATAACCAGAGACAAGGAGTTTCATAGAGAGAGAATAAAAAGACGAAATT ACCCTTCAACCTTCATCTTCTTCTCTCTTCTGTTAACTCCTCTTTCGATTCGATTTCACTTTTCGTTATCACCATGAACCACAAGGCCAATGTTTCCAAA GAGCTCAACGCTAAGCACAAGAAGATATTGGAAGAGCTTCTTAAATTATCAGAGAATAGGGAGTGTGCTGATTGCAAAGCTAAAGCTCCAAGATGGGCTA GTGTAAATCTTGGCATCTTTATATGCATGCAGTGCTCAGGAATTCATCGGAGCTTGGGGGTACATATTTCAAAGGTTCGTTCTGCAACTCTGGACACTTG GCTTCCAGAGCAAGTTGCATTCATTCAATCAATGGGAAATGAGAAAGCAAATAGTTATTGGGAAGCAGAATTACCTCCACGTTATGATAGAGTTGGAATT GAGAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGATTTCACGGGATGGGAAACCAAAATCACCATCTAGACTGCAGGAAGAGAAAACTCAGTCAC ATTGGCAGAGGCCTGTGGAAAGAAGTGGTCAAGGTTATGCAACTGCTTCTGAGATTTCTTTTCAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTCC TGCCACAAGAGTTAGTGTTCCTTCTCCTCCCAAAGGACCTGATCAGGTAATCCCTGCTATCAAACCTCAGCATGTTCAGAAAGTGGAACCAGTAGTACCA CAACTACCAGCTGAAACTTCAAATCAGGCTACAAATACTGCTCAAAATACTCCTCCAAAAGTTGACTATGCTACAGACCTTTTCAACTTGTTGTCTATGG ATGGCCCAAGTGAAAATGGCTCAGAGGCAGCTGCTGCTACTGCGGATGATAATAATTGGGCAGGTTTTCAGTCTTCTGCAGAGGCGTCAACAGCGGAGAA GACTAGTCCGTTGAAAGCATTTGAGAGCACTCCCCTGTCCGCATCTGGAATTGAGGATCTATTTAAAGATTCACCATCACTGACACCAAGCTTAGCTCCT GCAAAACCAGAGAAAGATGTAAAAAATGATATCATGAGCCTCTTCGGGAAGAGCAATATAGTTTCTCCATTTTCGATGCATCAACAGCAGCTGGCCATGT TAGCACAGCAACAGTCTCTTCTAATGGCTGCTGCAACTAAATCTACTGCTGGGAATCCCACATATACTGCTAGTACACAACATCCTAGCTCTAATATTCC TGGCCAGAATTGGCCAGCTGCAGGATACCAGATTTATGGAGTAACACCCATGGTTGGCCAGGGAGAGCTTCAGAAACTTATGCAGACTAGGAACATGACT CCAGCACATCCACCAGTGAGCTCTGTCCCATATCCTTCATCTGGGTACGTTATTAGCTAGTGTATTTAAAGTGAACTAATTTCAGTTTGGTTAATTACCT GATGTTGCCCCATAGAATTTATTCTATTGGTGCCAATTAACTTTGATTCCATAAGCCAAAATGAAGGAGAGTTACTTGTGGACTGTTGTGCCTTAAGGAT ATTTTGGGTTCTGTTTCCATTCCAACCATTATGACTTTAAAAAGAGATCTCTGTTCATATAGAATTTTCATTTCATAGTAGTTATGGTTGGTGCCAATCA GAGATTATTTTGTTTCAAGAACATGCCACAAATTTACATGGACTGTGTCATCCTTTGATGTAGCTCATGTTACAAATCAGTCATTGATCATCAAACCTTT TAATAATGTAATAATTCTCTTGTGCGATTTCATTAATTTAAAGCAAACTTTTATTATATAGGCTACTATATTCTCTATTACAGTACTTTATACATAACTT CTATAAATATACAAAAATGTTGCTCACTACTCATTCCCACTATTCTTTTATATATTTGATCTCCTATCGTGTTACTCCCTACTGCATCAACTGTGTTAAG CTAAGTTGCCATTTGTTGCAGTTTTTATTCTTTAGGGCAAGTTGCTCCGGTTAATGGAATGATGACAGCCGGAGCGAATAAACCTCAGTCAGCAGCACCA GTGTCATCAACTACTTCACATTCTGCAAAGGATTATGATTTTTCCTCCTTGACACAAGGGATGTTCGCGAAACAATGATAGTTCTTTTGTTGTGCAACGA TGGCGACAGCATATACCGCCATAGAAGATTACTTCGAAATTACAGGGAAGTGTACTTTATTTTTCAATCCCCCCCCTTCATGGGGGCTGTAAACCAATTG TAGAGCTAGTTCAGTTTTTACCTTGTTCTTTCTGGTGATTGCTTCATTGGTATCAGTAGGACTAATCAGTATTCAAGGTAAAAGTGGCATTAATTATATA TTTCTTATTTTGCTTCCATATCTTATATGATGGTAATTATAGCCATCCTATTTGGTCTTTCATAAACCAGATGATGAATTTATAATAATGTAGAGGATAT TTTAATTTTAATGATACATTTCAACTTTTTAATGTTTTTGTTAAGTTTGTCTTTCATAAGATGTCATAAATGAAGTTAGAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_189111; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_399183
| Blastp | Probable ADP-ribosylation factor GTPase-activating protein AGD5 from Arabidopsis with 60.54% of identity |
|---|---|
| Blastx | Probable ADP-ribosylation factor GTPase-activating protein AGD5 from Arabidopsis with 58.17% of identity |
| Eggnog | domain, ankyrin repeat and PH domain(COG5347) |
| Kegg | Link to kegg annotations (AT5G54310) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019426105.1) |
| Pfam | Putative GTPase activating protein for Arf (PF01412.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |