Ll_transcript_399193

• Id Trinity: TRINITY_DN51985_c0_g1_i26
• Name Transcript: Ll_transcript_399193
• Sequence: GAAGAAAAATCCATAAACACGCGTGATCTAAAATAACATAAGCGAATGAGGAAGGAGTGACTTGCAATCTTCTTCTTTCTTCTTAATTCTTATTCTTCCA TTACATCATCAAAGTCAGAGAGATTAAAAAGACCAAATTGACCCCCTTGGATCATCCTCTCTCTTCATTCACCATGAACCAAAAGGCCAACGTTTCTAAA GAGCTCAACGCCAAACACAAAAAGATATTGGAAGGGCTTCTAAAATTACCCGAGAATAAGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTA GTGTCAATCTTGGCATCTTTATTTGCATGCAATGTTCAGGCATACATCGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCTGCAACTTTGGACACTTG GCTCCCAGAGCAGGTTGCTTTCATTCAATCAATGGGAAATAAGAAAGCAAATAATTACTGGGAAGCAGAATTACCTCCACATTATGATAGAGTTGGAATC GAAAACTTCATTCGTGCAAAGTATGAAGATAAAAGATGGGTTGCAAGGGATGGGAGGCCAGCATCACCTTCTAAACTGCAAGAAGAAAACGCTCCTTCAC ATTGGCAGAGGCCTGTGGAAAGAGTTGGTCACAGTTATGGAGCTACATCTGAAAAGACTTTTGTGGAAAGGAAGAAAATTCAATCAAATGCAATTCCTGG TATAAGAATTAGTGTTCCTGCCCCTCCCAAAGGACCTGAGCAGGCAACACCTGTGACAAAACCTCAGCATGTTGAGAATGTGAAACCCATGGCAGCACAG CCGCAAGCTGAAACTTTAAAGCACACTACTGGATCAGATCAAAATGCCATTCCTAAATTTGACTTTGCTACAGACCTTTTTGACATGTTGTCTGTGGATG GTCCAAGTGAAAAGGGCTCAGATGCAGCTGGTGCTACTGCTGATGATAATAACTGGGCAGAATTTCAGTCTGCTGCTGAGGAATCAACAGCTGAGAAGAC AAATACCCCGAGTACAGTTGAGAGTACACCCCAGTCTACTTCTGGAATTGAGGATCTATTTAAAGATTCACCTTCTGTCACCCCAAGCTTAGCTCCAGAA AAACCACAAAAAGATATAAAAAATGATATCATGAGCCTCTTTGAGAAGACCAATATGGTATCTCCATTTGCTATGCATCAACAGCAGCTAGCCATGCTGG CACAGCAACAGTCCCTTCTAATGGCTGCCGCAGCCAAATCTTCCGGTGGGGATCCCAAGCATCCTTCTAGTGTACAACAACATCAGCATCAGCTGGCCAT GCTGGCACAACAACAGTCTTTTCTAATGGCTGCAACAGCTAAGTCTGCTGCTGGGGATCCTAAGTATCCTGCAAGTGTGCAACAATCTGGGTCCAAGATT CCTGTCCAAAGTTGGCCAGCTGCTGGTTACCCAATTCCTGGAGTAGTACCCATGGGTGGTCAGGGTCAGGGAGAGTTGCACAATCTCATGCAGACGATGA ACATGAATGGAGCGCATCCAGCAGCGAGCTCAGTTCAATATCCACCTTCTAGTTTCTATCCGATGGGGCAAGTTGCTCCAGTTAATGGGACATCGACAAT GGGAGTGAGTAAACCCCAATCTGCAGCTCCGGTATCATCAACCACTTCACAGAAAGGGAAGGATTATGATTTTTCCTCCTTAACACAAGGAATGTTTGGG AAACAATGATTGGCCTTTTGTTCAAGTGTCATATAATAACCATAGAACATTAGTTGAAATTACAGAAAGGGAGAGATTATTTTTCCTTTACCCTTGACCT TTCCTTCGGTTCTAAGCCATTTATAGAGAGCTATTGAGAAGTTTAGTGTCTTCCTCCTTTCGGGTTATCGCCTCATTTGAATGGATATTATATGTGATTT AACAATTGGTTAATGGTATTAATTGTTTATTCCTTCTACGTGTATATCTTCCACAAACTTTCCCAAAATAAGTTATGTAGTAGTATCTGGGTAAATAATT TATTTTATTCAACTGACTTTTCTTATTATTGCTTTCAAGTAACTCAAAAAAGACGAG
• Tissue: pods
• Gene name: LI_gene_189111;
• Additional information: details;

Expression of Ll_transcript_399193

FPKM

• PAB: 23.7
• PNAB: 7.2
• PS1: 16.6
• PS2: 7.5
• PS3: 10.1
• PW1: 11
• PW2: 10.1
• PW3: 9.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_399193

• Blastp: Probable ADP-ribosylation factor GTPase-activating protein AGD5 from Arabidopsis with 53.03% of identity
• Blastx: Probable ADP-ribosylation factor GTPase-activating protein AGD5 from Arabidopsis with 58.87% of identity
• Eggnog: domain, ankyrin repeat and PH domain(COG5347)
• Kegg: Link to kegg annotations (AT5G54310)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019453612.1)
• Pfam: Putative GTPase activating protein for Arf (PF01412.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;