Ll_transcript_399202

• Id Trinity: TRINITY_DN51985_c0_g1_i32
• Name Transcript: Ll_transcript_399202
• Sequence: GCATTCTTCATTTCTTATATTGTTCTATCAGAAAGAGAGAGAGAGAGAGTGAAAGAGAAAGTGCGTAAAAGACCAATTTGACCCCGTGAATCTTCTTCAT CCTCTCTCTCGCTCCCTCATTCATTCACCATGAACCACAAGGCCAACGTTTCTAAAGAGCTCAACGCCAAGCACAAAAAGATATTGGAAGGACTTCTAAA ATTACCAGAGAATAAGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCAAGTGTCAATCTTGGCATCTTTATTTGCATGCAATGCTCAGGAATA CATCGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCTGCAACTTTGGACACTTGGCTCCCAGAGCAGGTTGCATTCATTCAATCAATGGGAAATGAGA AAGCAAATAGTTACTGGGAAGCAGAATTACCTCCACGTTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAAAAGAGATGGGTTGC AAGGGATGGGAGACCAGCATCGCCTTCTAGATTGCAAGAAGAAAAATCTTCATCAAATTGGCAGAGGCCTGTGGAAAGGGTTGGGCACAGTTATGGCGTT ACATATGAGAATAGTTTTGAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTCCTACCATAAGAATTAGCGTGCCTGCTCCTCCCAAAGGACCCGGGC AGGTAACACCTGTTGCAAAACCTCAGCATATTGAGAACGTGGAACCCATGGCAACACAACAGCAAGCTGAAACTTCAAATCAGGCTACTGGATCATATAA AAATACCCCTCCAAGAGTTGACTTTGCTACAGATCTTTTTGACATGTTGTCTGTGGATGGTCCAAGTGAAAAGGAAAGGGGTTCAGAGGCAGCTGGTATT ACTGATGATGATAATAGCTGGGCAGGATTTCAGTCTGCTGCCGAGACATCAACAGCTGAGAAGATGGATACCCCGAGTGCAGTTGAGAATACACCCCAGC CTACTTCCGTAATTGAGGATCTATTTAAAGATTCACCTTCAGTGACGCCAAGCTTGGCTCCAGAAAAACCACAGAAAGATATAAAAAATGATATCATGAG CCTCTTTGAGAAGACCAATATGGTGTCTCCATTTGCTATGCATCAGCAGCAGCTGGCCATGTTAGCACAGCAACAGTCTCTTCTAATGGCTGCCGCTACT AAATCTGCTGGTGGGGATCCCAAATATCCCAGTAGTGTACAACATCAACAGCAGCTGGCCATGCTGGCACAGCAACAGTCTCTTCTGATGGCTGCTGCTG CTAAATCTGCAGCTGTGGATCCCAAGTATCCTGCAAGCGTACAACAATCTGGTTCCAACATTCCTGTCCAAAGTTGGCCAGCTGCCGGCTACCCAATTCC TGGACTAATGCCGATGGGTGGTCAGGGAGACTTGCAGAAACTCATGCAGACTATGAACATGACTGCACCGCATCCAGCAGGCGGCTCAGTTCAATATCCA CCATCTAGTTTCTATCCTCTGGGCCAAGTTGCTCCAGTTAATGGGACAAAGACAACAGGAGTGAGTACACCTCAATCTGCAGCTTCAGTATCATCAACCA CTTCACAAACAGGGAAGGATTATGATTTTTCCTCCTTAACACAAGGAATGTTTGCCAAACAATGATTGCTTTTTTTTTTAACATAGCTGGCTGTGTCATA TAATACCATAGAAGACTAGTTAAAAGTTAAAACTACAGAAAGGTGCACTTTCTTTTTCCCTCATGACCTTTCCTTGGATTGTAAGCCACTAATAGAGCTA TTGAGCTAGTTTAGTGTCTTCCTCCTTTCCAGGATCACTTCATTTGAATCGATATTTGATAAGCGATTTAAAAATAATTAATGATATTAATTGTTTTTGT TTCTTTTGTGTGAAAAAA
• Tissue: pods
• Gene name: LI_gene_189111;
• Additional information: details;

Expression of Ll_transcript_399202

FPKM

• PAB: 17
• PNAB: 11.2
• PS1: 19.8
• PS2: 19.5
• PS3: 22.2
• PW1: 19.4
• PW2: 27.7
• PW3: 31.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_399202

• Blastp: Probable ADP-ribosylation factor GTPase-activating protein AGD5 from Arabidopsis with 53.86% of identity
• Blastx: Probable ADP-ribosylation factor GTPase-activating protein AGD5 from Arabidopsis with 61.05% of identity
• Eggnog: domain, ankyrin repeat and PH domain(COG5347)
• Kegg: Link to kegg annotations (AT5G54310)
• CantataDB: Link to cantataDB annotations (CNT0001038)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019449130.1)
• Pfam: Putative GTPase activating protein for Arf (PF01412.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;