Ll_transcript_396981

• Id Trinity: TRINITY_DN51993_c1_g8_i2
• Name Transcript: Ll_transcript_396981
• Sequence: CAAAATTCAGTGACAAGAAGTATAAAGAAGCAGTGAGGCCTAGCCTTATATTTCTAAACCAAAACTTCTCTCACTCTTTTCAAACTCTTACCTTAGTTCT AGGTTCTTCTGATCACAAGAGGAATTAACACCAACTTTCTAAGTTCATCTAATCTTAGAAAGATATCAGTGTTGGGGTAGTGGTGTTTGGAGTGAAAAAC AGAAGAAAAAAGTGTGGTTTGTGAAGAAAAGGTTAGTGTAACAAAAAGGGTGGTGTGGGGTGGTTTTAGACAAGTGATGCGCTCAGGAGTTTGTACATTG CAGCAGACCCTCACAGCTGAGGCTGCTTCAATCTTGAAGCACTCTCTTGTGTTGGCGCGCCGTAGGGGCCATGCACAGGTCACCCCTCTGCATGTTGCAG CCATATTGCTGAGCTTAAGGGCAAGTAGTCCCTTCAAGAGGGCATGTCTGAAATCTCAGGCACAGTTTCAAACTTCATCACACCCTCTTCATTGCAGAGC TCTTGAGCTTTGCTTCAATGTTGCACTCAACAGGCTTCCAACAACACAAGGTCCTAGTTTTCTACACAATCAACCTTCTCTTTCCAATGCTCTCATTGCT GCACTCAAAAGAGCACAGGCACACCAGAAAAGAGGGTGCATAGAACAACAACAACAACCACTTCTCATTGTAAAAGTGGAGTTAGAACAACTCATCCTAT CTATTCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAAGCTGGTTTCTCTAGCACTGATGTGAAGAACAACATAGAAGATAACAAAACTTCAACAGC AACAACATTAACAACTTCTGTTTTTTACAACAATTCTGGTGGTGGTGTTTTCTCTTCTCCTTGTTCACCTAGTGAAAACCAAAAAAATCAGCTTTTTTTG GGTTCTTACACCAACTCTCATGAGTATAGTACACCATTGATGTTTCCCATCACTCATGAAGAAGATGTGAAGGTGGTTTTAGATATTCTTTTAGGTAAGA ATAAGAAAAAGAATACTGTGATAGTTGGTGACTCTTTATCATTAAATGAAGGCCTTGTAGAAGAGATAATGAGAAAATTTGAAAGAGGAGAAGTACCTAA TGAGTTGAAGACAACAAATTTTATCAAGTTTCAATTTTCTTCTTTGAGGTTCATGAATAAAGATGAAGTGAAAATGAACCTTTCATCACTGAAAAAGAAG GTAGATTTTGTTATATCAAGTGAAAGGGGTGCTATATTTTATGTTGGAGATTTGAAGTGGATATTGGAGGGAATTAGTTTGTGTGAGAAAGAGGGTGGTT GGGGTAGTTATAACAGTGTTGATGATGTAGTTGAAGAAATAGGGAAATTGTTTTGTGGTTTGGGAGATTCAAACACTAGTAAGGTGTGTCTTATGGGGAC AGCAAGTTATCAAACATACATGAGATGTCAAATGAGACAACCTCCTCTTGAGACTCAGTGGAATCTTCAGGCTGTTCCTGTTCCATCTGGTGGACTTGGC TTGAGTCTTCATGCTTCAAGTGTCTATGATTCAAAGATGACCAACTCCCTCAACCAATCTCAAATGGTGGAAACAAAGCTGTTCAGCATGAAGGAGGAGC ATGATAAGCTGAATTGTTGTGAAGAATGTGGCTCAAATTATGAAAAAGAAGCTTTATTGTTCAAACCAGGCCATAAGAAACTATTGCCTTCATGGCTTCA GTCTCACTGCACTCAAGTCCATCATATGGATGAAATAACTCAGCTGAAAAGAAAATGGAATAGACTATGCCATTGTCTCCACCAAAGAAAACAACCACAA AGCCATTGGAGCAATAGTTTATATGGCAATAACAGTTCAAATGCTAAGATCTACCCTTATAATTCATCATACCCCTGGTGGCCAAGCCAAACTAGTGTCT TCATTGATTCAAATTCTATATCTTTTGCTGATTCTGATTCAGCAAGACCAGCTTATAGCTCCAACCTTATCCCTCACTTCCAGCATCAACAATCATGCAC CATTGAGTTCAATTTGAGCAATGATGTAGCTGATGAGAAAAAAGAAGAAACAACAATCTTGGATTCTGTTAAGAGCATTGTTGAAGATAAAGAAGTAAAG ATTACTCTTGCTCTTGGAAATTCAACATACAGTGATGATGGTTCAAGGGAAAAGGTGGAGAATATATGTGATAATACAACACTTGTGCAACAAGCTCATA TTTGTAAACTGTTGCAGGAGAATGTGCCATGGCACTCTGAGAAAGTTCCTTCAATATCAGAAGCATTGGTTCTCGGTTGTTCCAAATCAGCAATGCAAAA AAGTGCTACATGGTTATTCATGCATGGCAATGACTATGTTGGGAAAACAAGATTGGCGCGCGCAATTGCAGAATCATTTTTTGGCTCAGTGAATGATGAT AAGTTCCTTCACTTGGACATGCTGATCAAAACATGTGAGGACTTGGGAACATCAACCCCATTTTCTGAAATTGTGGATGGAGCATTGAAAACACATGAAC AGCTTGTGATTTTGATAGAAAATGTTGGTTATGCTGATGCCCATTTCAAGAAGTTCCTTGCAGATGAATTTGAGACATTAAAGCTTGGAAATTTATGTAA CAATGAGGAGAATCCATGCAATGCAATATTCATATTGAGTAATGGTGGTTGCACTAAAAGAACCTATAATGAAAAGCATAACAAGGACTTTGTGATGAAA CTTGTGTTGCAAGTTAGTGAAACCAAGTCAACATTGGAGCCATCATCATCACCTTCTTCGAGCCACAAGAGAAATCAATCTAAACTTGATTTGTTTACCA AGATCAAGAAGCCAAGGATTGAAGAAAAGGAAGAAGAAGAAGAAGAAGAAAAAGTTTTGGTTTGTGAAACAAAGAAAGAGTTTTCTACACAGTCAAGCTT TAACACTCTTGACCTGAACATAAAAGCTGATAATGATGAAGAAGAGAATCATGAGGAAAGTAGTTCAAATTCAAGTGATTCAACTAGAGAAATTGTAGCT CATAATCTGAACTCAATGAAGAACAGATTTGAGTTAAACCAAAGTCCATCTAAGGAAAGGGAAATGAAAGAGATGTTTCTGTTGAAAATCAAAGGATCTT TTGAGGAGATTTTTGGTGTAGTGAACTTTAGTGTAGAGGATAAGGTGATAGAGGAAATTAGTGTAAGGTGTGGTTCATTTACTAACAGCATGTTTGAGAA ATGGCTCAAACACATTTTTCAAAGAAGTTTAAGGATAGTTAAGTTTGGTGGGAAGGAAAAGGAAAATGGGGGTATAGTTTTTACACTTTGTTGGAGTGGT AAAGGTGACAAAAAATGTGATAGTGGGTTCATGAGTTCATGTCTTCCCAACAATATTCAAGTTAACTACTTCATGGATTGAGTCACTTTGGGTATATATT ATGGAGGGGATTATTGTAAAATTGTTCACAAAATCTGTAAAATGGTAATAGCTTTTGTGTAATTGCTGATTTTCATTATAGAATGTTTGTTTTTCTCAAG TTTTAATGATTAAGTATCATGAGTCTGGCTCCTCTTCGGTACTGGAG
• Tissue: pods
• Gene name: LI_gene_189193;
• Additional information: details;

Expression of Ll_transcript_396981

FPKM

• PAB: 0
• PNAB: 0.6
• PS1: 0.6
• PS2: 0
• PS3: 0.2
• PW1: 0.3
• PW2: 0.1
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_396981

• Blastp: Protein SMAX1-LIKE 4 from Arabidopsis with 41.32% of identity
• Blastx: Protein SMAX1-LIKE 4 from Arabidopsis with 40.61% of identity
• Eggnog: ATP-dependent CLP protease ATP-binding subunit(COG0542)
• Kegg: Link to kegg annotations (AT4G29920)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019416288.1)
• Pfam: Clp amino terminal domain, pathogenicity island component (PF02861.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;