Ll_transcript_397889

Id TrinityTRINITY_DN51994_c1_g1_i12
Name TranscriptLl_transcript_397889
SequenceCAAAATTGTCCATTTCTAATTTTTTGTTAAAATAAATTAAAATCCAAAATCACTTTCATTTCTCACTCTCTCGCTCACACTTATTTCGTTTACTTCTCAA AACCCTCTCTTCAGATTCAGAGAGAAAACACACAACCTTCGAATCGGGTTTTGTGTTCAGCTCAGTGAAACGCTTAGAGGACGCGATTTTTTGCTGTTGA GGATTCTTTTAAAGTTATGGAGGATAATCCCCCTTCAAATTTTTTGGATGGGGAGGTCGTCGGAATAAGATTTGGCATGGCTACACGCCAGGAAATTTGT ACAGCGTCCATTAGTGACTCTGCAATTAGTCATGCTAGTCAGCTGTCAAATCCTTTTCTTGGCCTTCCCCTTGAATTTGGAAGATGTGAATCATGTGGTG CTTCTGAAGCTGGGAAATGTGAAGGCCACTTTGGTTATATTGAACTACCTGTTCCAATATACCATCCAAGCCATGTCAGTGAATTGAAGCGGATGCTGAG CCTGGTTTGTTTAAACTGCTTGAAAATGAAAAAAACCAAGTTTCCAGCATCAAACAGTGGTGTAGCACAGAGACTATTACCTTCCTGTTGTCCGGACACT AATGCTGCACAAGTTTCTATTCGGGAGGTCAAAACAACCGATGGGGCTTGTTATTTGACACTAAAGGTGTCAAAGTCGAAGATGCAGCCTAGTTTTTGGA GCTTCTTAGAAAAATATGGCTATCGATATGAGGGTTCAAATATTCGAGCTTTGCTTCCTTGTGAGGCAAAGGAGATTATTAAGAGAATTTCTCATGAGAC CAAGAAAAAGCTTGCTGGAAAAGGATATTTTCCTCAAGATGGCTATGTTTTGAAGTCTCTTCCTGTACCACCAAACTGCTTATCAGTGCCAGTGGCTTCA GATGGCATCAGTGTCATGTCTTCGGACCCTTCCATAACAATTCTCAGAAGATTGCTCAGGAAGGTTGAAGTAATCAGAAGCTCTAGATCTGGTGAACCAA ACTTTGAGTCTCATCAAATAGAAGCAAATGAATTGCAGTCAGTTTTTGATCAGTATCTTCAAGTAAGGGGCACTTCTAAGGCAGCCCGGGATATAGAAAC TCATTATGGGGTCAATAAAGAGCTCAATGAATCATCAACAAAAGCATGGCTTGAGAAAATGAGGACTCTATTTATAAGAAAGGGTTCAGGTTTCTCTTCT CGCAGTGTTATCACTGGAGATGCCTACAAGAAAATTAATGAAGTTGGAATTCCGGTTGAAGTAGCCCAAAAGATTACCTTTGAGGAAAGAGTTAATATTC ATAACTTGAGCTATCTGCAAAAGTTAGTTGACGAACATTTATGTTTGACATACAAGGAAGGTGTGTCAACTTATTCATTAAGGGAAGGCTCAAAGGGCCA CATTTATCTTAAGCCGGGTCAGATAGTCCATCGGAGGATTATGGATGGTGACACTGTGTTCATCAACAGGCCACCTACAACACATAAACACTCGTTACAG GCACTGCAAGTTTACATCCATGATGACCATACTGTCAAAATTAATCCTCTCATTTGTGGGCCCCTTGGGGCTGATTTTGATGGAGACTGTGTCCATCTAT TTTACCCACAGTCACTTGCTGCTAAAGCTGAGGTGTTGGAACTATTCGCCGTGGAGAAACAGCTGCTAAGTTCTCACAGTGGTAATCTGAACCTACAACT GACTTCTGATTCACTATTGTCACTGAAGATGCTGTTCAAGACTTGTATTTTGGATAGAGTGGCAGCTCATAGATTGGCTATGTTTCTTACCCATCCATTG CCTAGGCCTGCCGTGCTCAAAGCCAATTCTGGTGACGCTTGGACTGCCATGCAACTTTTACAGTGTGCACTGCCCTCTTCTTTTGATTGTGCTGGAGGCC GTTACTTGATTAGCCATAGTGATATTGTGGAGTTTGATTTCAGTAGGGATCTTCTGCCAACTATGATAAATGAAATCGCAGCCTCAATTTTCTTTTCAAA AGGACCTCAGGAAGCACTAAAATTTTTTGACGTTATTCAGCCCTTTTTGATGGAGAACATATTTGCTGATGGGTTTAGCGTTGGTCTTCAGGATTTCTCG ATATCCCGGGCGCGGAAAAGAATTATTAATAGAAGCATTGCGAAAGTTTCTCCATTGCTGTATCAGCTAAGGTCAATATACAATGAGCTGGTGGCACAAC AACTGGAAAAGCACATTGAAGATGTTGAAAAACCTGTTATCAATGTTGCTCTAAAGTCATCCAGACTTGGAGATTTGATTGACTCAAAAAGTAAGTCGGC CATTGACAAGGTGGTTCAACAAATGGGGTTCTTAGGCCAACAGCTTTTTGAAAGGGGAAGATTCTACTCAAGGGAGTTGATTGAGGATATTGCATCCCAT TTCCACACGAAGTGTTGTTATGATGGGGATGGTTATCCCTCTGCTGAATATGGGCTGCTTAAAGGATGTTTTTTTCACGGCTTGGATCCATATGAAGAGA TGGTGCATTCAATTTCCACTAGAGAAATACTTGTGCGTTCCTCGAGAGGATTATCTGAGCCGGGAACGCTATTCAAGAACTTGATGGCCATCCTTCGTGA TGTTGTGGTTTGCTATGACGGGACAGTACGGAATGTTTGCAGCAATTCGGTCATTCAGTTTGAGTATGGGATACAAGCAGGAGATACGACTCAAAACTTA TTCCCGGCTGGTGAGCCTGTTGGGGTCTTAGCAGCAACTTCTATGTCAAATCCTGCATATAAGGCCGTTCTTGATGCTAGTCCAAGCAGCACTTCTTCAT GGGAGTTGATGAAGGAAATATTACTCTGCAAGGCCAATTTTAGGAATGAACCTATTGATCGTCGTGTTATTTTGTATTTGAATGACTGCTGTTGTGGAAG GAGTTATTGCATTGAACATGCAGCATATGCAGTTAAAAATCAATTGAGAAAAGTCACTCTCAAGGACATATCAGTAGAGTTCATCGTCGAATATCAACAG CAGCGAAATCGCAAGGACAGTTCTGAAATTGCTGCTGGGCTTGTTGGCCACATTCATCTGGATGAGGTTATGCTAAAGAAGCTAAAGGTCAATTTGGATG AAGTTTTGCAAAGATGCCAGGAAAGACTTAATTCCTTTAATCGGAAAAAGAAAGTAAATCAAATTTTTAAGAGGACTGAGTTGGATTTCAGCGAGTCTTG CTATTGTTCACATCATTCTGCACCATGTGTCAAGTTCCTCTGGCCAGATGGCGATCATAGTGATTTGGACAAAACTGCAAACATCATGTCTGACATAATT TGCCCGGTTTTGTTAGAGACAGTAGTCAAAGGAGATCCACGTATAAGCTCTGCAAATATAATCTGGGTTAATCCAGATACAAACACATGGGTCCGAAACC CCTCCAAATCTCCAAAGGGTGAATTGGCTCTAGATGTCATTCTCGACAAGGCAGCTGTGAAACAAAGTGGCGATGCTTGGAGGATTGTCCATGACTCATG CCTTCCTATCCTTCATTTGATTGATACAAGACGGTCAATCCCTTATGCTATTAAGCAAATTCAAGAGTTACTTGGAATCTCATGTACATTTGCTCAAGCA ATTCAGCGTCTTGCCACGTCAGTAAAAATGGTTTCCAAAGGTCTCCTTAGAGAGCATCTCATTCTCTTAGCAAGTAGCATGACTTGTGGTGGGAATTTGG TGGGCTTTAACACTGGAGGATATAAAGCACTGGCACGACAACTAAACATCCAAGTACCATTTACTGATGCGACACTGTTTACACCTCGAAAATGTTTTGA GCGAGCTGCTGAAAAGTTCCATACAGATTCTTTATCAAGCGTAGTTGCCTCCTGTTCATGGGGTAAACATGTGGCTGTGGGTACAGGTTCAAAATTTGAT GTCGTATGGAATGCGAAAGAGATAAAGTCCAGCGAGAATAGAGGGATGGATGTATACAATTTTCTTTATATGGTGAAAGACTTCACCAGTGGAGAAGAAG AAAAAAATACTTGTTTAGGTCAAGACATTGATGATCTGCTAGACGATGAAAATATGGATTGGGGCATGTCTCCCCAACACACGTCTGGTTTTGATGATGC AGTCTTTGAGGAGAACTCTGAACTACCAAATGCTTCAACTTCCAATGGTTGGGGATCAAATAAAGCTGAAGGTGCATCTGAAAATGCCAAGGAGGATTCT TGGAGTTCTGGAAAGCAGAAAACTGATGTTGTCCAAGAAGACTCTTCTAGGTCCAATGCTTGGGATGCCAATACAAAGAAAACAGAGACGAAGTCTAATG ATTGGTTGGCCTGGGGAGGTAACAAATCTGAAACTCAAGATGGCAGTTCTGATACAGCCCAAGAGGATTCTTGGAGCTCTGGTCAGAGGAAAGCTAATGT TACCCAAGTAGATGCTCCTAAGTCTGGTACTTGGGATGCAGACACCAACCAAACAAAAGCAAAGTCAAATGATTGGACGGCATGGGGAGACAAGAAATCT GAAATACAAGATGTCGGGTTTAAAAGAGCAGAAGAGGATTCTTGGAGCTCTGGTAATAGGAAAGCCAATGTTGCCCAAGAAGACTCTTCTAAGCCCGGTG CATGGGATACTAACACCGACCAAACAAAAACAAAGTCGAATGATTGGTTGGACTGGGGTGGAAAGAAATCTGAAATTCAAGATGGTGGGTCCGGACGAGA CCAAGAGGATTCTTGGAACTCTGGTCAGAGGAAAGCTAGTGTTATCCAAGATGACTCTTCTAAGCCTGGTGCTTGGGATGCAAAAGCCAACCAAGCAAAA ACAACATCAAATGAGTGGTCAGGGTGGGGAGGAAAGAAATCTGAAGTGCAAGGTGGTGGGTTTGAAAGATCCCAAGAGGATTTTGGGAGCTCCCGGAAGT GGAATGCTGAATCTAAGGTTGGATCCAAAGTTATCCAAGAAGAAGCATCAAGGTCTAATGCTTGGGATGCAAATACAGACCCGAAAAAAACGAAGTCAAA TGATTGGTCTGCTTGGGGAAGTAAAGGTGAAATACAAGATAGCAGGTCAGAAAGATCCCAAGAGGATTCTTGGGGCTCTGCTAAGTTGAAAGCGGAATCA AATGTTGGAGCTGATGTTAGACAAAAAGACTCTTCTAGGTCTAATGCTTGGGAAAGTAATTTCAACAAATCCTCAGAAAACCCAGCATGGGGTTCCCAAA ATGAGTCAAATCAAGCTGCAAGTTCCCAAGGATGGGACTCACAAATCGCTTCTGCAAATTCTGGCCGTGACAAAAACTTTCAATGGGGAAAATCCAAATC CTCAGAAAGCCAATCATGGGATTCCCAAAATGAGTCAAATCAGGCTGCAAGTTCTCAAGGATGGGACTCACAAGTCGCTTCAGCTAATTCTGACAGTGAC AAAAGCTTTCAATGGGGAAAGCAGGGCAGAGAATCATTCAAGAAAAACCGCTTTGAAGGTTCGCAAGGACGCGGTTCAAATGCAGGTGACTGGAGAAATA TGAATCGCCCCCCCAGACCACCACCTCCAATGTACACACCCGAGGAACAGGAAGTTCGTAAGGATATTGATTCTATTATGCAGTCAATCAGACGTATCAT GCAACAAGAAGGGTACAATGATGGGGATCCGCTAGCAGCAGAGGATCAAGCATTTGTGCTTGAGAATGTCTTTGAACACCATCCAGATAAGGAAACCAAA ATGGGTGATGGAATTGATTATGTCATGGTTAGCAGACACAGCAATTTTCAGGAAAGTAGATGCATGTACGTGGTTTTAAAGAATGGTAAAAAGGAGGACT TTTCCTACAGGAAGTGCCTGGAAAACCTAGTACGGAAGAAGTATCCAGACGTTGCAGAATCGTTCAACGACAAGCATTTCCGGAAACCTCGTGGAAGAGC AGGAGGGGACCAGGCCACAACAACTCCATTGCCTACTTCTACTGAAACAAACCAGGCACCAAGAACTCCATTGCCTACTTCTACTGAAACAAACCAGGCT GCAATATCATCATGGCCTACTTCTACTGAAACAAAGCAGGCTCCAACATCATCATGGGCTACTTCTACTGAAACAAACCAGGCTGCAATATCATCATGGC CTACTTCTACTGAAACAAAGCAGGCCCCAACTTCATCATGGCCTACTTCTACTGAAACAAAGCAGGCTCCAACATCATCATGGCCTACTTC BLAST
Tissuepods
Gene nameLI_gene_189195; 
Additional informationdetails; 

Expression of Ll_transcript_397889

Labels

PAB abscising pods
PNAB non-abscising pods
PS1 seeds stages 1-3
PS2 seeds stages 4-6
PS3 seeds stages 7-8
PW1 pods wall stages 1-3
PW2 pods wall stages 4-6
PW3 pods wall stages 7-8

Annotations of Ll_transcript_397889
BlastpDNA-directed RNA polymerase V subunit 1 from Arabidopsis with 47.72% of identity
BlastxDNA-directed RNA polymerase V subunit 1 from Arabidopsis with 51.46% of identity
EggnogDNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity)(COG0086)
KeggLink to kegg annotations (AT2G40030)
CantataDBLink to cantataDB annotations (CNT0000674)
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019449371.1)
PfamRNA polymerase Rpb1, domain 1 (PF04997.11)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;
Links to GO: General; Genes and gene products; Annotations; Ontology;