Ll_transcript_397133

• Id Trinity: TRINITY_DN51996_c0_g1_i14
• Name Transcript: Ll_transcript_397133
• Sequence: CACAATTCCAAATTCACTTTCCGCAAAACAAAAAAACAAAACACTCTTTCTCTCTTTCTTTCTCGACTCCGCGGCGTAGATCCGAGGAGTTTGGGAAACC CTAATTCTTTTCAACCTTCGCTTTTTCATCGCAATCCGAAGACATGGCAGCAGCACCTGAAGGGTCGCAGTTCGATGCTAAGCAATTCGATTCTAAGATG AATGACTTGCTTACATCTGAGGGACAGGATTTCTTCACATCTTATGACGAGGTTCATGATAGTTTTGATGCTATGGGCTTGCAAGAAAATCTCCTGAGAG GCATTTATGCATATGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCCAGGGACTTGATGTTATACAGCAAGCTCAGTCTGG AACTGGGAAGACAGCAACTTTCTGCTCTGGGATTCTGCAGCAGCTTGACTATAGCGTTACTGAATGCCAGGCCTTGGTTTTAGCACCAACTCGTGAGCTT GCTCAGCAGATTGAGAAGGTTATGCGGGCACTTGGAGACTATCTAGGTGTGAAGGTGCATGCTTGTGTGGGAGGTACCAGTGTTCGTGAAGACCAGCGCA TTCTATCAAGTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGATATGCTGCGTAGACAGTCACTTAGGGCCGATTACATCAAGATGTTTGT ATTGGATGAGGCTGATGAAATGCTTTCTCGGGGTTTTAAAGACCAGGTGCTTTTTAATTCACAACTTCTTTTGTCCAGTTTTTTTAATTACTAACTTTTT TATCCTATGTTTGTTTGATATGCAATGCTTGGACATGTCTTTACTTTTTGTATCAATGCTAAAGTCATACTTTTATCCAATTTCATCAAATTTCTTCCTT AATTCCACTTTTTCCTTATTTATATCTCATTTTAAAATATTTTTGAAACTTCAACTCTGTTTCAATCACCAGATGTATGTTTCTGCTAGTAGTCATTATA CGAAAATGTGATAGTTATCTCCTCTGTACTATATTTTTGCTGTCCTATTGGTTTAATGCCCTAAATGAATTTATTTATGCGTACGTTGTTTAACCTTTCT TTTTTGTTGTTAGATCTATGATATATTCCAGCTGCTTCCATCCAAGATTCAGGTGGGAGTTTTCTCTGCTACCATGCCTCCAGAGGCTCTTGAGATCACA AGGAAATTTATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGACGAGCTTACCTTGGAAGGTATTAAGCAGTTTCATGTCAATGTCGAGAAAGAGGAGT GGAAGCTGGACACACTCTGTGATCTTTATGAGACATTGGCGATCACTCAGAGTGTCATTTTTGTGAACACCAGAAGGAAGGTTGATTGGCTTACTGACAA GATGCGAAGCCGAGATCACACAGTCTCAGCAACCCATGGAGACATGGACCAGAATACCCGTGACATTATCATGCGTGAATTCCGTTCTGGGTCTTCCCGT GTTTTAATAACTACTGATCTTTTGGCTCGTGGTATTGACGTCCAACAAGTGTCTCTAGTTATAAACTATGATCTTCCAACACAGCCTGAGAACTATCTCC ATCGTATTGGTCGCAGTGGAAGATTCGGTAGGAAGGGTGTTGCCATCAACTTTGTCACAAAGGATGATGACAGAATGCTTTTTGACATCCAGAAGTTCTA CAATGTGATAATTGAGGAGCTGCCATCAAATGTTGCTGAACTCCTCTAAAGAAATTTTTGAGTCCATCTTATTATAGGGAAGTTGGTTTCCGAGGTAAGT TCTATGTAATGCTTCTTTCCTTTCCCCCTTTTGTTGTATTTCTGCTTTTAAACCCTTTGAACTTTTTATAGGTCTAGTCATTTAATTTAATTTCAGCCAG TTGAATGTGTACTTGCAATATGGAATCTCATTATTGCTGGAATTGGTGTATTTCCTTTTTTGCAGTTTAATATACATTTTAATCATTATAACATAGCATA CATTGTGGTAGTATGGTTTTTGTGTGTGTATTGAAAATGGATTTAGGTAATTTCATTCTCTTGATTACATAATTTATTTTATAACTTTACAATATTAATA AAATGAAAGTGGCCATCTGTAAGCATGTATCTATATTTGCTGTTTTGCCACTGAAAAC
• Tissue: pods
• Gene name: LI_gene_189208;
• Additional information: details;

Expression of Ll_transcript_397133

FPKM

• PAB: 16
• PNAB: 36.7
• PS1: 19.4
• PS2: 23.8
• PS3: 23.7
• PW1: 33.3
• PW2: 33
• PW3: 38.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_397133

• Blastp: Eukaryotic initiation factor 4A-15 from Nicotiana with 89.9% of identity
• Blastx: Eukaryotic initiation factor 4A-1 from Oryza sativa with 96.21% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (107814763)
• CantataDB: -
• Mirbase: lja-MIR7534 (MI0024418)
• Ncbi protein: Link to NCBI protein (XP_019415274.1)
• Pfam: DEAD/DEAH box helicase (PF00270.28)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;