| Id Trinity | TRINITY_DN51996_c0_g1_i18 |
|---|---|
| Name Transcript | Ll_transcript_397139 |
| Sequence | CACAATTCCAAATTCACTTTCCGCAAAACAAAAAAACAAAACACTCTTTCTCTCTTTCTTTCTCGACTCCGCGGCGTAGATCCGAGGAGTTTGTGAAACC CTAACTGTTCTCAACCAACTTTTTCATCTTCATCCGAAGTCATGGCAGCAGCAGCACCTGAGGGGTCACAGTTCGATGCTAAGCAATTTGATTCCAAGAT GAATGAGTTGCTTACATCCGATGGACAGGACTTCTTCACATCTTATGATGAGGTTCATGATAGTTTTGATGCTATGGGCTTGCAAGAAAATCTCCTGAGA GGCATTTATGCATATGGTAGCTTCAATGTTCTTTTTAGGCTCTTATACTTTCTGTTTTTTATTTAGTTTTTAATGGTTTAACGGCTTGACCCAATGAATT ATTTTCATACTTTAATGTGATAACAAAATTCTGTTCTGCATATTTGAGACTTCAAAATTTTTTTCTTTCAAAAAAAGCATTTCAAGCATGTGACGGCAAC ATAACACTTTGGACATCATCTTTCTGCTCTACCATGGTGTTCATTGTCCTGCCACTGTTTCCCCCGAAACAGTATGTTTAAATCCTTAAAGTAGTTTGAC ACATTTTTAGGTTTCGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAAGGGACTTGATGTTATACAGCAGGCTCAGTCTGGAACTG GGAAGACTGCAACATTCTGCTCTGGGGTTCTGCAGCAACTTGACTACGGTGTGACTGAATGCCAGGCCTTGGTTTTGGCACCAACCCGTGAGCTTGCTCA GCAGATTGAGAAGGTTATGCGGGCACTTGGAGACTATCTAGGTGTGAAGGTGCATGCTTGTGTGGGAGGTACCAGTGTTCGTGAAGACCAGCGCATTCTA TCAAGTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGATATGCTGCGTAGACAGTCACTTAGGGCCGATTACATCAAGATGTTTGTATTGG ATGAGGCTGATGAAATGCTTTCTCGGGGTTTTAAAGACCAGATCTATGATATATTCCAGCTGCTTCCATCCAAGATTCAGGTGGGAGTTTTCTCTGCTAC CATGCCTCCAGAGGCTCTTGAGATCACAAGGAAATTTATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGACGAGCTTACCTTGGAAGGTATTAAGCAG TTTCATGTCAATGTCGAGAAAGAGGAGTGGAAGCTGGACACACTCTGTGATCTTTATGAGACATTGGCGATCACTCAGAGTGTCATTTTTGTGAACACCA GAAGGAAGGTTGATTGGCTTACTGACAAGATGCGAAGCCGAGATCACACAGTCTCAGCAACCCATGGAGACATGGACCAGAATACCCGTGACATTATCAT GCGTGAATTCCGTTCTGGGTCTTCCCGTGTTTTAATAACTACTGATCTTTTGGCTCGTGGTATCGATGTCCAGCAAGTGTCTCTAGTTATAAACTATGAT CTCCCAACACAGCCGGAGAACTATCTCCATCGTATTGGTCGTAGTGGAAGGTTTGGTAGGAAGGGTGTTGCCATCAACTTTGTGACAAAGGATGATGAAA GAATGCTTTATGACATCCAGAAGTTCTATAATGTGATAATTGAGGAGCTGCCTTCAAATGTTGCTGAACTCCTCTAATAAATTTTGGGTCCATCAATTAG AGGAAAAGTTGGGTTTTTCTGAGGTAAGTTTGATGTAATGTTTCTTTATGTGTTTTCCCTTTTGTTTTCTGCTTTTAAACCCTGTTTAAAACATTTTATA GGTGTAGTAATTTAATTTGAAGTTTTTTCAGTGGGTTGAATGTCCAAAGTGTTAAGTACTCACATTATTGCCCGAACTGGTATATTCTATGCGAGTTTCA AAGATTACGTACTATTCTCTTATTACTCACTTTATTâBLAST |
| Tissue | pods |
| Gene name | LI_gene_189208; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_397139
| Blastp | Eukaryotic initiation factor 4A-1 from Oryza sativa with 96.5% of identity |
|---|---|
| Blastx | Eukaryotic initiation factor 4A-1 from Oryza sativa with 96.34% of identity |
| Eggnog | purine NTP-dependent helicase activity(COG0513) |
| Kegg | Link to kegg annotations (4341966) |
| CantataDB | - |
| Mirbase | lja-MIR7534 (MI0024418) |
| Ncbi protein | Link to NCBI protein (XP_019415274.1) |
| Pfam | DEAD/DEAH box helicase (PF00270.28) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |