Ll_transcript_473032

• Id Trinity: TRINITY_DN52025_c3_g1_i1
• Name Transcript: Ll_transcript_473032
• Sequence: ATTGCATGGAAATGTTGGGAATATTTTTTATGGGTTCACTCCAACATTGTGATAATGTGATATTAGGTCTTGTTCACTCCACCATATCTGTATAGGTATT GCTATTTTTGTGTTTTATTTTACTCTTGGTTGGGATGGTAAATTGGAACAATTGCATTAGTTGCAGCATAAAGCTACAAATTTTGTGCCCCTTGTTCAAT CTTAGGAGTATGAAATATTACCTTTTTTATAGGACAAGGGTGAAACCCCGTATTAAAAATGTGTATATAAGAAGGAATAAAAGGGTTGGGTAGTTTTCTG TTATGAGCAGTTAGTTAGTTGGAGGAAAATCTATAAATAGAAGGTGTGTTGTAATAGGAGGCAGTTTTTGTAAAGTGAGGGAAAGGAGGGTAATTTACTG ATTTGGGAATCAACAAACCCTAGGCATCTATTCCAATTGGTGTAATGTCCCAATTGAATTCTATATCAATAATAAGAACAATTCAAGATCACATTGATCT TGAATCATCACTTTTCTTCCACCAATCTTCTACTTTCTATTTCTAAAATTATCAGTTCTAACACCTTTACTATCCATTTTTGTGCTGCCTTCGGAAGATA CTAATCTTGATTCATTCTGTCGCATTTGTAGAACCTTGTCACAATCGTTTAGGTAATTTGGGGCATGGACTTGCTGTTTATGCCCCTGTCAGTGTCTGTG AACAATGTTTAGCAGACCGAGAGATTCAAGTGCTTTCAGTATATTCAAATGGAAACGTCAGAATGAATCATCAGTCACTACAGGTTTACTTCAGGATGAT CCGTCCGAGATTGAATTGTCTGATTATAGAAGGACCCCGAGTCCAGGTAGTGAGAGCCCTTCAGGGCTTCTTAATGGTGAAAGCCTAAATGCAGAACCAA TTGCTGACTTGGATCTCTTCTTTGAAAGGCTTTACAGCTACTACTGTGAGAAAGGACTTTGGTGCATCATTATAAAGTGGATCGTTGAACTTTCGAGTCT AGTGTTCACCATATGTTTTTCGGGATTCTTTTTATTATATGTTGATTGGAATGGCCTTCGTAATGCAAAGTGTGGGATGGGTGCAGTTGAGTATGGAATC AAGCCCTGTGATCTTGCTAAAGAAGCTCTTCATCAACACCCTTTGACTCCATTAACACCTAAGAAAGTTATTATTGTCGGATACTTGGGAATATTTTCCA TCTATTGGATATTTTGCTTCTTGAGATTTTTCGCTCAACTAAAGTGTACTCTGGGAATCCGGCAGTTTTACTACAATAGTCTCCATGTTACCGACAATGA AATTCAAACCATGCCCTGGGCTACAGTTATTGAAAAAGTTGTCCAGATGCAAAGCTCGCAACAACTATGTGTGGTAAAGGATCTTTCTGCTCATGACATG GTGTTGAGGTTGATGCGGAAAGAAAACTACTTGATTGGAATGATCAACAAGGGTGTGCTTGCGTTCCCCATTTCTCAGTGGGTCCCAGGTGTTGGACCTA CTGTGAAATCTGGTCCTAATGGAACACAATATCGTCTAATACTAACCAAGACCCTTGAGTGGACTTTGAATTGGTGCATCCTGCAAAGCATGTTTGATCG AAACTTCTGTGTCAGAATGGATTTTGTATCAAATCCAAGGACATTGAAGAAAAGGCTTATGGTAGTTGGGCTTGCAATGCTTTTACTCTCTCCATTTATA GTCATATTCATGCTGGTATATCTCTTTCTGAGGCATGCTGAACAGTTTTATAATCACCCAAGCACAGCATCCTCTCGAAGATGGTCAAATTTGTCAAGGT GGATCTTTAGGGAGTTCAACGAGGTGGACCATCTCTTCAAGCATCGGATTAATAGCAGTGAATTACATGCTTCTGATTATCTCAAGCAATTTCCTTCACC TATCATATCTATCACTGCAAAATTCATCTCCTTCATGTCGGGTGGTTTTGCTGCAGTTCTGATCATCATTGCTTTTCTTGAGGAGTCTCTGCTAGAGGGT CACATATTTGGTCGGAACCTGCTGTGGTATGCTGCTGTTTTTGGAACTATAACAGCAATTAGCCGGGCTGCTATCACAGATGAGATTCTCGTGTTAGACC CTGAAAGAGCAATGTCTATGGTAGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGAAAAGAAAGTACTGTAAATGTCCGAATGGAGTTTGAAAC CTTATTCCAATATACTGGGATGATGTTACTTGAGGAGATGTCATCAATTTTCCTTACTCCATACTTACTTCTATTTGTTGTCCCGAAGCGGGTTGAAGAT ATCTTGCAGTTCATTGCAGATTTTACTGTGAATGTTGAAGGTGTAGGTCATATTTGCAGCTTTAGCAACTTTGATTTTCAAGAGCATGGAAACAGTAATT ATGGCTCCCCGCACAATGCTCCTCACAGCCGGAGGAGTTCCTGGGGGAAGTTTGAGAAGTCGTTTTTGAGCTTTCAGAGCAGTTATCCTTCATGGGAATC AAATGCTCAAGGTAAACAATTTTTGCAAAATCTGAGAACCTTCAGAGAGCAAAAGTTACCGGGACATGTAAACAGATATTCATATTCCCCTCCTAGGATG TGGAAAGGTAGTCCCAATATGGAAAGCAATGAAGACAGAAAAAGGTTTATATCTCGGGAAATGTCACATCATACTTTCGAAACTGGCAATCACTTGGGTT CCTTGTGGCTAATTGAAGCCAATCAAAACAATCACCCCTATCTTCTCGATTGGTACTATACTTCCCGATCTCACGATGTGACTTCCAGAGAGGTTCCAAT TCCGAATGATCCATTTGATGTTAATGATTGTCATTCTGGAGTTTGGATGCGCTCAAACTTGACAGAGAATGAACCTGGGTATGATGAATACTTGAACGAG TATCATGATGATAATCGAGCTGCTTCTTATCTCGGAGCTTCCATATCAGCTCCCATCTTCAGGGAAAGTTTAATTCAGGATCAAAGTTCCAATGATCAGC CCCACACTACCAGGAGCCATTGGTGGGCTAGAAGTCACCACCAGGATGAACCGGGTCAAACAAGCTTCTTCGAGCCTCCAGATTTCAATCAGCAAACAAC AGCATATAATAACTACTATGATAAATTTTCTGATAGAGGAGGCTCAGAGGGTCATCATGATCAGGAACAATTGTATAGGAGAGATGAGCACGATTTATCT AGAACAGCATTCACAAATGACTTAGAAGCTGGAGAATTCTATCTTCATTTTGATGATATTTATAGCAGCAGGCCTCCACAAAATCCCACTGTAAATTCAA GCACTACAAGCTTTTGAATGATGCCTTTGTCCTACATAATTGCAAGAGTTTCATAGTGATGATTGCCCCTTCTATTCCATGGAAAGGGGAATTTGATTCT TTGTTGTAAATAGACTCATTGACTGTGATTAGATTGTTGATGAGCCTCAGTTTGTTGTTTAAGAACCAAATGTTTCTTCTGCTAAAAATCATTCATGGCA TGCAGTTTTCTAATTCTTCACCTACTTTTTTTGTACTTCATTTTTTTAAGGGTTCAATTTAG
• Tissue: pods
• Gene name: LI_gene_189457;
• Additional information: details;

Expression of Ll_transcript_473032

FPKM

• PAB: 0.3
• PNAB: 0.1
• PS1: 0.2
• PS2: 0.2
• PS3: 0.3
• PW1: 0.1
• PW2: 0.1
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_473032

• Blastp: Autophagy-related protein 9 from Arabidopsis with 65.98% of identity
• Blastx: Autophagy-related protein 9 from Arabidopsis with 65.98% of identity
• Eggnog: Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE)
• Kegg: Link to kegg annotations (AT2G31260)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434383.1)
• Pfam: Autophagy protein Apg9 (PF04109.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;