Ll_transcript_473045

• Id Trinity: TRINITY_DN52025_c3_g1_i10
• Name Transcript: Ll_transcript_473045
• Sequence: GAAACAACAGAAATTCTAAGGAAGAAGAAGAAAAGAGGAAACATAGGAAGAATCAGAAACAGAATATAAACCTTAAACCTATTTCATATCAAAATTACGG TTGAATGTTATTTGCTCCTCTTCTTCTGCGCAACCAATAACAACAATAAAAAACGAAGCCCTCATCTTCTCTCTTTGTTATATTCCTTTTGTTCAATCAC TTCCCAACTTGTTTCATCTTCAAATTTATCATCTTTCCCTAATTTCTGTTTCTGGGGTATTCCTCAATTCTCACTTTCTTCATTCATTGTATACCATCTT TCATGTTTTCTATCTAATCCTAGAACCTTGTCACAATCGTTTAGGTAATTTGGGGCATGGACTTGCTGTTTATGCCCCTGTCAGTGTCTGTGAACAATGT TTAGCAGACCGAGAGATTCAAGTGCTTTCAGTATATTCAAATGGAAACGTCAGAATGAATCATCAGTCACTACAGGTTTACTTCAGGATGATCCGTCCGA GATTGAATTGTCTGATTATAGAAGGACCCCGAGTCCAGGTAGTGAGAGCCCTTCAGGGCTTCTTAATGGTGAAAGCCTAAATGCAGAACCAATTGCTGAC TTGGATCTCTTCTTTGAAAGGCTTTACAGCTACTACTGTGAGAAAGGACTTTGGTGCATCATTATAAAGTGGATCGTTGAACTTTCGAGTCTAGTGTTCA CCATATGTTTTTCGGGATTCTTTTTATTATATGTTGATTGGAATGGCCTTCGTAATGCAAAGTGTGGGATGGGTGCAGTTGAGTATGGAATCAAGCCCTG TGATCTTGCTAAAGAAGCTCTTCATCAACACCCTTTGACTCCATTAACACCTAAGAAAGTTATTATTGTCGGATACTTGGGAATATTTTCCATCTATTGG ATATTTTGCTTCTTGAGATTTTTCGCTCAACTAAAGTGTACTCTGGGAATCCGGCAGTTTTACTACAATAGTCTCCATGTTACCGACAATGAAATTCAAA CCATGCCCTGGGCTACAGTTATTGAAAAAGTTGTCCAGATGCAAAGCTCGCAACAACTATGTGTGGTAAAGGATCTTTCTGCTCATGACATGGTGTTGAG GTTGATGCGGAAAGAAAACTACTTGATTGGAATGATCAACAAGGGTGTGCTTGCGTTCCCCATTTCTCAGTGGGTCCCAGGTGTTGGACCTACTGTGAAA TCTGGTCCTAATGGAACACAATATCGTCTAATACTAACCAAGACCCTTGAGTGGACTTTGAATTGGTGCATCCTGCAAAGCATGTTTGATCGAAACTTCT GTGTCAGAATGGATTTTGTATCAAATCCAAGGACATTGAAGAAAAGGCTTATGGTAGTTGGGCTTGCAATGCTTTTACTCTCTCCATTTATAGTCATATT CATGCTGGTATATCTCTTTCTGAGGCATGCTGAACAGTTTTATAATCACCCAAGCACAGCATCCTCTCGAAGATGGTCAAATTTGTCAAGGTGGATCTTT AGGGAGTTCAACGAGGTGGACCATCTCTTCAAGCATCGGATTAATAGCAGTGAATTACATGCTTCTGATTATCTCAAGCAATTTCCTTCACCTATCATAT CTATCACTGCAAAATTCATCTCCTTCATGTCGGGTGGTTTTGCTGCAGTTCTGATCATCATTGCTTTTCTTGAGGAGTCTCTGCTAGAGGGTCACATATT TGGTCGGAACCTGCTGTGGTATGCTGCTGTTTTTGGAACTATAACAGCAATTAGCCGGGCTGCTATCACAGATGAGATTCTCGTGTTAGACCCTGAAAGA GCAATGTCTATGGTAGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGAAAAGAAAGTACTGTAAATGTCCGAATGGAGTTTGAAACCTTATTCC AATATACTGGGATGATGTTACTTGAGGAGATGTCATCAATTTTCCTTACTCCATACTTACTTCTATTTGTTGTCCCGAAGCGGGTTGAAGATATCTTGCA GTTCATTGCAGATTTTACTGTGAATGTTGAAGGTGTAGGTCATATTTGCAGCTTTAGCAACTTTGATTTTCAAGAGCATGGAAACAGTAATTATGGCTCC CCGCACAATGCTCCTCACAGCCGGAGGAGTTCCTGGGGGAAGTTTGAGAAGTCGTTTTTGAGCTTTCAGAGCAGTTATCCTTCATGGGAATCAAATGCTC AAGGTAAACAATTTTTGCAAAATCTGAGAACCTTCAGAGAGCAAAAGTTACCGGGACATGTAAACAGATATTCATATTCCCCTCCTAGGATGTGGAAAGG TAGTCCCAATATGGAAAGCAATGAAGACAGAAAAAGGTTTATATCTCGGGAAATGTCACATCATACTTTCGAAACTGGCAATCACTTGGGTTCCTTGTGG CTAATTGAAGCCAATCAAAACAATCACCCCTATCTTCTCGATTGGTACTATACTTCCCGATCTCACGATGTGACTTCCAGAGAGGTTCCAATTCCGAATG ATCCATTTGATGTTAATGATTGTCATTCTGGAGTTTGGATGCGCTCAAACTTGACAGAGAATGAACCTGGGTATGATGAATACTTGAACGAGTATCATGA TGATAATCGAGCTGCTTCTTATCTCGGAGCTTCCATATCAGCTCCCATCTTCAGGGAAAGTTTAATTCAGGATCAAAGTTCCAATGATCAGCCCCACACT ACCAGGAGCCATTGGTGGGCTAGAAGTCACCACCAGGATGAACCGGGTCAAACAAGCTTCTTCGAGCCTCCAGATTTCAATCAGCAAACAACAGCATATA ATAACTACTATGATAAATTTTCTGATAGAGGAGGCTCAGAGGGTCATCATGATCAGGAACAATTGTATAGGAGAGATGAGCACGATTTATCTAGAACAGC ATTCACAAATGACTTAGAAGCTGGAGAATTCTATCTTCATTTTGATGATATTTATAGCAGCAGGCCTCCACAAAATCCCACTGTAAATTCAAGCACTACA AGCTTTTGAATGATGCCTTTGTCCTACATAATTGCAAGAGTTTCATAGTGATGATTGCCCCTTCTATTCCATGGAAAGGGGAATTTGATTCTTTGTTGTA AATAGACTCATTGACTGTGATTAGATTGTTGATGAGCCTCAGTTTGTTGTTTAAGAACCAAATGTTTCTTCTGCTAAAAATCATTCATGGCATGCAGTTT TCTAATTCTTCACCTACTTTTTTTGTACTTCATTTTTTTAAGGGTTCAATTTAG
• Tissue: pods
• Gene name: LI_gene_189457;
• Additional information: details;

Expression of Ll_transcript_473045

FPKM

• PAB: 2.7
• PNAB: 1.2
• PS1: 2
• PS2: 1.1
• PS3: 1.3
• PW1: 1.2
• PW2: 2.7
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_473045

• Blastp: Autophagy-related protein 9 from Arabidopsis with 65.98% of identity
• Blastx: Autophagy-related protein 9 from Arabidopsis with 65.98% of identity
• Eggnog: Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE)
• Kegg: Link to kegg annotations (AT2G31260)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434383.1)
• Pfam: Autophagy protein Apg9 (PF04109.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;