Ll_transcript_473047

• Id Trinity: TRINITY_DN52025_c3_g1_i12
• Name Transcript: Ll_transcript_473047
• Sequence: TTTTAACTAGAGAACCCAAAAATCTGAAGGAAGAAGAAAGAAAGAAGAAAAGAAGAGTGAGAAAGTGAATAAAAACCTTAAAACATTTTATTATTATATA TATAAATTCTTTGTTACTGCAATTTCCTCTTCCCCCACGCAACAAATAACACCAAAACAAAACCAAAGCCCTCGTCTTTTCTTCTTTCTCATCTCCATTT TATTCGATCAATTTCACAACTTCTCTTATCTCTTCGAATCTCTCACTTTTCCCCAAATTCTCTTTCTGGAACCTTGGCACAACCATTTATGTCATTTGGG GCATGGACAGGCTATTTATTCCCCTGCCAGTGTCTTTGAACAATGTTTAGCAGACCAAGAGATCCAAGTGCTTTCAGTATTTTCAAATGGAAACGTCAAG ATGAATCATCAGTGACAACAGGTTTACTTCAGGATGTTCTGCCCGAGATTGAGTTGTCTGATTATAGAAGGATCCCAAGTCCAGGTAGTGAGAGTCCTTC AGGGCTTCTTAATGGTGAAAGCCTAAATGCAGAACCGATTCCTGACTTGGATCTATTCTTTGAAAGGCTTTACAGCTACTACTGTGAGAAAGGACTTTGG TGCATCATTATAAAGTGGATTGTTGAACTTTTGAGTCTAGGGTTCACGATATGTTTTTCAGGATTCTTTTTACTGTATGTTGATTGGAATGGCCTTCGTA ATGCAAAGTGTGGGATGAATGCAGTTGAGTCAGGAATTAAGCCTTGTGATCTTGCTAAAGAAGCTCTTCATCAATACCCGTTGACCCCGTTAACACTTAA CAAATCTATTATTGTTGGATACTTGGGAATATTTTCCATCTATTGGATATTTTGCTTCTTGAGGTTCTTTGCTCAACTAAAGTATACTCTGGAAATCCGA CAGTTTTACTACAATAGTCTCCATGTTACCGACAATGAAATTCAAACCATGCCCTGGGCTACAGTTATTGAAAAAGTTGTTCGGGTGCAAAACTCACAAC AACTATGTGTGGTAAAGGATCTTTCTGCTCATGACATGGTGATGAGGTTGATGCGGAAGGAGAACTACTTGATTGGAATGATCAACAAGGGTGTGCTTGC GTTCCCCATTTCTCAGTGGGTCCCAGGTTCTGGTCCTACAGTGAAATCTGGTCCTAATGGAACACAATATCGTCTAATACTAACCAAGACCCTTGAGTGG ACTTTGAATTGGTGCATCCTGCAAAGCATGTTTGATCGGTATGCTCTACAGATAACCTTTTCATGTACAATCAGTGTATTCAATATCTTTTGAATCTTGT AACTTGTAAATATATGGCCTTTCATAATCTCATGTTTAGCTGTCAAATTTCTTTTCTCAAACTGGTTTAGAAAATGACGTCTTCGTTTGAACGACTCAAT GACCATTCATTTACACTAGTCTAGGAAGCCATTTTGGGACTGTTAGGAAGTCTTAGAGGTCTGTTGGACAGGGTAAATATTGAACATTGATTTCAACTAT AATAGCAAAAGTGTTTTCCCCACCAGGTGAGTTGGCTACATGGATCAGATAAAAAAAACTGATGTCTTCTGTCATAAATTAAGTCTTTATAAAGGTCTGT TAGATCCAAGTTCTTTTTAGCAGTTTCATTTAGAGTAGCACTGTTTTTCGGTCTTTCTCTACCTCTAGCTATTGGCATATCCTTCACTCGATAAAGTCTT CTTACCGAGGTTTTTATTAGTCTTCTTTTCACACGGCCTTATGACCCCAGGCAAGATTCTCTCTGACTTTCCTCAATTGGTGCTACCCCTTTCTTCTCTC TCATACATTTGTTCTAGATCTTGTCTTGTTTTGTGTGTCTACTAGTCCATCGCAACATCCTCATTAGTTTATGCTCTTGTTGGCTTTTTACTGCCTAACA GAAAGTACCATAAAGCACTGCAGGTTTTATTTCATTTAATTGTTTTTTATCTTCTATTTTGTATTTTGTATTTCATTTGAATGCACTATGTGGTGATTTA GTCAAGTAAATTGTGTGATATTATTCATAATACTATATTTGTTCAATGGTGGTTTTCTCCTTTTAACACGGTTTTTCTTTACAGAAACTTTTGTGTCAGA AGGGATTTTGTATCAAATCCAAGGACATT
• Tissue: pods
• Gene name: LI_gene_189457;
• Additional information: details;

Expression of Ll_transcript_473047

FPKM

• PAB: 0.8
• PNAB: 0.3
• PS1: 0.4
• PS2: 0.2
• PS3: 0.3
• PW1: 0.3
• PW2: 0.4
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_473047

• Blastp: Autophagy-related protein 9 from Arabidopsis with 76.25% of identity
• Blastx: Autophagy-related protein 9 from Arabidopsis with 76.25% of identity
• Eggnog: Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE)
• Kegg: Link to kegg annotations (AT2G31260)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019433827.1)
• Pfam: Autophagy protein Apg9 (PF04109.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;