Ll_transcript_473051

• Id Trinity: TRINITY_DN52025_c3_g1_i15
• Name Transcript: Ll_transcript_473051
• Sequence: TTTTAACTAGAGAACCCAAAAATCTGAAGGAAGAAGAAAGAAAGAAGAAAAGAAGAGTGAGAAAGTGAATAAAAACCTTAAAACATTTTATTATTATATA TATAAATTCTTTGTTACTGCAATTTCCTCTTCCCCCACGCAACAAATAACACCAAAACAAAACCAAAGCCCTCGTCTTTTCTTCTTTCTCATCTCCATTT TATTCGATCAATTTCACAACTTCTCTTATCTCTTCGAATCTCTCACTTTTCCCCAAATTCTCTTTCTGGGTATTCACCAATTCCACGTTTTTTTGATTTA TTTCTTGTCTTCTTCGTAATCATAGAACCTTGGCACAACCATTTATGTCATTTGGGGCATGGACAGGCTATTTATTCCCCTGCCAGTGTCTTTGAACAAT GTTTAGCAGACCAAGAGATCCAAGTGCTTTCAGTATTTTCAAATGGAAACGTCAAGATGAATCATCAGTGACAACAGGTTTACTTCAGGATGTTCTGCCC GAGATTGAGTTGTCTGATTATAGAAGGATCCCAAGTCCAGGTAGTGAGAGTCCTTCAGGGCTTCTTAATGGTGAAAGCCTAAATGCAGAACCGATTCCTG ACTTGGATCTATTCTTTGAAAGGCTTTACAGCTACTACTGTGAGAAAGGACTTTGGTGCATCATTATAAAGTGGATTGTTGAACTTTTGAGTCTAGGGTT CACGATATGTTTTTCAGGATTCTTTTTACTGTATGTTGATTGGAATGGCCTTCGTAATGCAAAGTGTGGGATGAATGCAGTTGAGTCAGGAATTAAGCCT TGTGATCTTGCTAAAGAAGCTCTTCATCAATACCCGTTGACCCCGTTAACACTTAACAAATCTATTATTGTTGGATACTTGGGAATATTTTCCATCTATT GGATATTTTGCTTCTTGAGGTTCTTTGCTCAACTAAAGTATACTCTGGAAATCCGACAGTTTTACTACAATAGTCTCCATGTTACCGACAATGAAATTCA AACCATGCCCTGGGCTACAGTTATTGAAAAAGTTGTTCGGGTGCAAAACTCACAACAACTATGTGTGGTAAAGGATCTTTCTGCTCATGACATGGTGATG AGGTTGATGCGGAAGGAGAACTACTTGATTGGAATGATCAACAAGGGTGTGCTTGCGTTCCCCATTTCTCAGTGGGTCCCAGGTTCTGGTCCTACAGTGA AATCTGGTCCTAATGGAACACAATATCGTCTAATACTAACCAAGACCCTTGAGTGGACTTTGAATTGGTGCATCCTGCAAAGCATGTTTGATCGAAACTT CTGTGTCAGAATGGATTTTGTATCAAATCCAAGGACATTGAAGAAAAGGCTTATGGTAGTTGGGCTTGCAATGCTTTTACTCTCTCCATTTATAGTCATA TTCATGCTGGTATATCTCTTTCTGAGGCATGCTGAACAGTTTTATAATCACCCAAGCACAGCATCCTCTCGAAGATGGTCAAATTTGTCAAGGTGGATCT TTAGGGAGTTCAACGAGGTGGACCATCTCTTCAAGCATCGGATTAATAGCAGTGAATTACATGCTTCTGATTATCTCAAGCAATTTCCTTCACCTATCAT ATCTATCACTGCAAAATTCATCTCCTTCATGTCGGGTGGTTTTGCTGCAGTTCTGATCATCATTGCTTTTCTTGAGGAGTCTCTGCTAGAGGGTCACATA TTTGGTCGGAACCTGCTGTGGTATGCTGCTGTTTTTGGAACTATAACAGCAATTAGCCGGGCTGCTATCACAGATGAGATTCTCGTGTTAGACCCTGAAA GAGCAATGTCTATGGTAGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGAAAAGAAAGTACTGTAAATGTCCGAATGGAGTTTGAAACCTTATT CCAATATACTGGGATGATGTTACTTGAGGAGATGTCATCAATTTTCCTTACTCCATACTTACTTCTATTTGTTGTCCCGAAGCGGGTTGAAGATATCTTG CAGTTCATTGCAGATTTTACTGTGAATGTTGAAGGTGTAGGTCATATTTGCAGCTTTAGCAACTTTGATTTTCAAGAGCATGGAAACAGTAATTATGGCT CCCCGCACAATGCTCCTCACAGCCGGAGGAGTTCCTGGGGGAAGTTTGAGAAGTCGTTTTTGAGCTTTCAGAGCAGTTATCCTTCATGGGAATCAAATGC TCAAGGTAAACAATTTTTGCAAAATCTGAGAACCTTCAGAGAGCAAAAGTTACCGGGACATGTAAACAGATATTCATATTCCCCTCCTAGGATGTGGAAA GGTAGTCCCAATATGGAAAGCAATGAAGACAGAAAAAGGTTTATATCTCGGGAAATGTCACATCATACTTTCGAAACTGGCAATCACTTGGGTTCCTTGT GGCTAATTGAAGCCAATCAAAACAATCACCCCTATCTTCTCGATTGGTACTATACTTCCCGATCTCACGATGTGACTTCCAGAGAGGTTCCAATTCCGAA TGATCCATTTGATGTTAATGATTGTCATTCTGGAGTTTGGATGCGCTCAAACTTGACAGAGAATGAACCTGGGTATGATGAATACTTGAACGAGTATCAT GATGATAATCGAGCTGCTTCTTATCTCGGAGCTTCCATATCAGCTCCCATCTTCAGGGAAAGTTTAATTCAGGATCAAAGTTCCAATGATCAGCCCCACA CTACCAGGAGCCATTGGTGGGCTAGAAGTCACCACCAGGATGAACCGGGTCAAACAAGCTTCTTCGAGCCTCCAGATTTCAATCAGCAAACAACAGCATA TAATAACTACTATGATAAATTTTCTGATAGAGGAGGCTCAGAGGGTCATCATGATCAGGAACAATTGTATAGGAGAGATGAGCACGATTTATCTAGAACA GCATTCACAAATGACTTAGAAGCTGGAGAATTCTATCTTCATTTTGATGATATTTATAGCAGCAGGCCTCCACAAAATCCCACTGTAAATTCAAGCACTA CAAGCTTTTGAATGATGCCTTTGTCCTACATAATTGCAAGAGTTTCATAGTGATGATTGCCCCTTCTATTCCATGGAAAGGGGAATTTGATTCTTTGTTG TAAATAGACTCATTGACTGTGATTAGATTGTTGATGAGCCTCAGTTTGTTGTTTAAGAACCAAATGTTTCTTCTGCTAAAAATCATTCATGGCATGCAGT TTTCTAATTCTTCACCTACTTTTTTTGTACTTCATTTTTTTAAGGGTTCAATTTAG
• Tissue: pods
• Gene name: LI_gene_189457;
• Additional information: details;

Expression of Ll_transcript_473051

FPKM

• PAB: 1.6
• PNAB: 0.9
• PS1: 0.7
• PS2: 0
• PS3: 0.3
• PW1: 0.2
• PW2: 0.1
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_473051

• Blastp: Autophagy-related protein 9 from Arabidopsis with 65.58% of identity
• Blastx: Autophagy-related protein 9 from Arabidopsis with 65.58% of identity
• Eggnog: Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE)
• Kegg: Link to kegg annotations (AT2G31260)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434383.1)
• Pfam: Autophagy protein Apg9 (PF04109.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;