Ll_transcript_473052

• Id Trinity: TRINITY_DN52025_c3_g1_i16
• Name Transcript: Ll_transcript_473052
• Sequence: GAAACAACAGAAATTCTAAGGAAGAAGAAGAAAAGAGGAAACATAGGAAGAATCAGAAACAGAATATAAACCTTAAACCTATTTCATATCAAAATTACGG TTGAATGTTATTTGCTCCTCTTCTTCTGCGCAACCAATAACAACAATAAAAAACGAAGCCCTCATCTTCTCTCTTTGTTATATTCCTTTTGTTCAATCAC TTCCCAACTTGTTTCATCTTCAAATTTATCATCTTTCCCTAATTTCTGTTTCTGGGAACCTTGTCACAATCGTTTAGGTAATTTGGGGCATGGACTTGCT GTTTATGCCCCTGTCAGTGTCTGTGAACAATGTTTAGCAGACCGAGAGATTCAAGTGCTTTCAGTATATTCAAATGGAAACGTCAGAATGAATCATCAGT CACTACAGGTTTACTTCAGGATGATCCGTCCGAGATTGAATTGTCTGATTATAGAAGGACCCCGAGTCCAGGTAGTGAGAGCCCTTCAGGGCTTCTTAAT GGTGAAAGCCTAAATGCAGAACCAATTGCTGACTTGGATCTCTTCTTTGAAAGGCTTTACAGCTACTACTGTGAGAAAGGACTTTGGTGCATCATTATAA AGTGGATCGTTGAACTTTCGAGTCTAGTGTTCACCATATGTTTTTCGGGATTCTTTTTATTATATGTTGATTGGAATGGCCTTCGTAATGCAAAGTGTGG GATGGGTGCAGTTGAGTATGGAATCAAGCCCTGTGATCTTGCTAAAGAAGCTCTTCATCAACACCCTTTGACTCCATTAACACCTAAGAAAGTTATTATT GTCGGATACTTGGGAATATTTTCCATCTATTGGATATTTTGCTTCTTGAGATTTTTCGCTCAACTAAAGTGTACTCTGGGAATCCGGCAGTTTTACTACA ATAGTCTCCATGTTACCGACAATGAAATTCAAACCATGCCCTGGGCTACAGTTATTGAAAAAGTTGTCCAGATGCAAAGCTCGCAACAACTATGTGTGGT AAAGGATCTTTCTGCTCATGACATGGTGTTGAGGTTGATGCGGAAAGAAAACTACTTGATTGGAATGATCAACAAGGGTGTGCTTGCGTTCCCCATTTCT CAGTGGGTCCCAGGTGTTGGACCTACTGTGAAATCTGGTCCTAATGGAACACAATATCGTCTAATACTAACCAAGACCCTTGAGTGGACTTTGAATTGGT GCATCCTGCAAAGCATGTTTGATCGAAACTTCTGTGTCAGAATGGATTTTGTATCAAATCCAAGGACATTGAAGAAAAGGCTTATGGTAGTTGGGCTTGC AATGCTTTTACTCTCTCCATTTATAGTCATATTCATGCTGGTATATCTCTTTCTGAGGCATGCTGAACAGTTTTATAATCACCCAAGCACAGCATCCTCT CGAAGATGGTCAAATTTGTCAAGGTGGATCTTTAGGGAGTTCAACGAGGTGGACCATCTCTTCAAGCATCGGATTAATAGCAGTGAATTACATGCTTCTG ATTATCTCAAGCAATTTCCTTCACCTATCATATCTATCACTGCAAAATTCATCTCCTTCATGTCGGGTGGTTTTGCTGCAGTTCTGATCATCATTGCTTT TCTTGAGGAGTCTCTGCTAGAGGGTCACATATTTGGTCGGAACCTGCTGTGGTATGCTGCTGTTTTTGGAACTATAACAGCAATTAGCCGGGCTGCTATC ACAGATGAGATTCTCGTGTTAGACCCTGAAAGAGCAATGTCTATGGTAGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGAAAAGAAAGTACTG TAAATGTCCGAATGGAGTTTGAAACCTTATTCCAATATACTGGGATGATGTTACTTGAGGAGATGTCATCAATTTTCCTTACTCCATACTTACTTCTATT TGTTGTCCCGAAGCGGGTTGAAGATATCTTGCAGTTCATTGCAGATTTTACTGTGAATGTTGAAGGTGTAGGTCATATTTGCAGCTTTAGCAACTTTGAT TTTCAAGAGCATGGAAACAGTAATTATGGCTCCCCGCACAATGCTCCTCACAGCCGGAGGAGTTCCTGGGGGAAGTTTGAGAAGTCGTTTTTGAGCTTTC AGAGCAGTTATCCTTCATGGGAATCAAATGCTCAAGGTAAACAATTTTTGCAAAATCTGAGAACCTTCAGAGAGCAAAAGTTACCGGGACATGTAAACAG ATATTCATATTCCCCTCCTAGGATGTGGAAAGGTAGTCCCAATATGGAAAGCAATGAAGACAGAAAAAGGTTTATATCTCGGGAAATGTCACATCATACT TTCGAAACTGGCAATCACTTGGGTTCCTTGTGGCTAATTGAAGCCAATCAAAACAATCACCCCTATCTTCTCGATTGGTACTATACTTCCCGATCTCACG ATGTGACTTCCAGAGAGGTTCCAATTCCGAATGATCCATTTGATGTTAATGATTGTCATTCTGGAGTTTGGATGCGCTCAAACTTGACAGAGAATGAACC TGGGTATGATGAATACTTGAACGAGTATCATGATGATAATCGAGCTGCTTCTTATCTCGGAGCTTCCATATCAGCTCCCATCTTCAGGGAAAGTTTAATT CAGGATCAAAGTTCCAATGATCAGCCCCACACTACCAGGAGCCATTGGTGGGCTAGAAGTCACCACCAGGATGAACCGGGTCAAACAAGCTTCTTCGAGC CTCCAGATTTCAATCAGCAAACAACAGCATATAATAACTACTATGATAAATTTTCTGATAGAGGAGGCTCAGAGGGTCATCATGATCAGGAACAATTGTA TAGGAGAGATGAGCACGATTTATCTAGAACAGCATTCACAAATGACTTAGAAGCTGGAGAATTCTATCTTCATTTTGATGATATTTATAGCAGCAGGCCT CCACAAAATCCCACTGTAAATTCAAGCACTACAAGCTTTTGAATGATGCCTTTGTCCTACATAATTGCAAGAGTTTCATAGTGATGATTGCCCCTTCTAT TCCATGGAAAGGGGAATTTGATTCTTTGTTGTAAATAGACTCATTGACTGTGATTAGATTGTTGATGAGCCTCAGTTTGTTGTTTAAGAACCAAATGTTT CTTCTGCTAAAAATCATTCATGGCATGCAGTTTTCTAATTCTTCACCTACTTTTTTTGTACTTCATTTTTTTAAGGGTTCAATTTAG
• Tissue: pods
• Gene name: LI_gene_189457;
• Additional information: details;

Expression of Ll_transcript_473052

FPKM

• PAB: 1.1
• PNAB: 1.2
• PS1: 1.2
• PS2: 1.1
• PS3: 1.6
• PW1: 1.5
• PW2: 0.3
• PW3: 1.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_473052

• Blastp: Autophagy-related protein 9 from Arabidopsis with 65.98% of identity
• Blastx: Autophagy-related protein 9 from Arabidopsis with 65.98% of identity
• Eggnog: Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE)
• Kegg: Link to kegg annotations (AT2G31260)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434383.1)
• Pfam: Autophagy protein Apg9 (PF04109.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;