| Id Trinity | TRINITY_DN52025_c3_g1_i19 |
|---|---|
| Name Transcript | Ll_transcript_473055 |
| Sequence | AAGCTCATTGCTTTCTGGCATGCCCTTTTCAAATGAAACATAGAAAAGGGGTGTGGATGGGGAGGGGGGAACATTCTTATGCTTATACATGCTTGACTAG TGAAATTGAAATTTGAAACCTTTTATCTTCATTCTAAATCGTGAACTTTGGTGTGGATATGATCACATTCCTTTAGTTCAGATTTTTAGCATGTTTTGTA ATTATGGTCCTATGCAGTAGAGTTGGTGATACATAGTGAATGTTCTGTCGGATTGGTATGATGTCTCTATATAAATTGCTTGTTAGTGAGGACTGCTCAC TCTCCTCTTCAATTCATTATGAAATGTGAGTATTAACTGAGATAGATAATGGTCTGGCGTGATGTACATTCTTTGGTTGATACCTTGGCATGGAAACTGT GGATAGGAGTACCACTTGTTCTCCTAATACTTTCGTTTTTGTTATAACTTATTATCGCTGACAAAAAAAAGGTCTTGTTGAATCAGCTATATTTCAATTG GTGATTTGCTATTTGTTTGCTTTTCTTACTTAGGTGGGTTGGTAAATAGGAAAAATTGCATCAGTAGCACATAAATCTATAAATTTTGAGCTCCTTGTTT AATTTGATAAAGCATGAAATGCTGTTTCTTAATTCTATTTTTGTGCTGCCTTTGGAGATATTAATATTGTTTCGTTCTATCTCATTTTAGAACCTTGGCA CAACCATTTATGTCATTTGGGGCATGGACAGGCTATTTATTCCCCTGCCAGTGTCTTTGAACAATGTTTAGCAGACCAAGAGATCCAAGTGCTTTCAGTA TTTTCAAATGGAAACGTCAAGATGAATCATCAGTGACAACAGGTTTACTTCAGGATGTTCTGCCCGAGATTGAGTTGTCTGATTATAGAAGGATCCCAAG TCCAGGTAGTGAGAGTCCTTCAGGGCTTCTTAATGGTGAAAGCCTAAATGCAGAACCGATTCCTGACTTGGATCTATTCTTTGAAAGGCTTTACAGCTAC TACTGTGAGAAAGGACTTTGGTGCATCATTATAAAGTGGATTGTTGAACTTTTGAGTCTAGGGTTCACGATATGTTTTTCAGGATTCTTTTTACTGTATG TTGATTGGAATGGCCTTCGTAATGCAAAGTGTGGGATGAATGCAGTTGAGTCAGGAATTAAGCCTTGTGATCTTGCTAAAGAAGCTCTTCATCAATACCC GTTGACCCCGTTAACACTTAACAAATCTATTATTGTTGGATACTTGGGAATATTTTCCATCTATTGGATATTTTGCTTCTTGAGGTTCTTTGCTCAACTA AAGTATACTCTGGAAATCCGACAGTTTTACTACAATAGTCTCCATGTTACCGACAATGAAATTCAAACCATGCCCTGGGCTACAGTTATTGAAAAAGTTG TTCGGGTGCAAAACTCACAACAACTATGTGTGGTAAAGGATCTTTCTGCTCATGACATGGTGATGAGGTTGATGCGGAAGGAGAACTACTTGATTGGAAT GATCAACAAGGGTGTGCTTGCGTTCCCCATTTCTCAGTGGGTCCCAGGTTCTGGTCCTACAGTGAAATCTGGTCCTAATGGAACACAATATCGTCTAATA CTAACCAAGACCCTTGAGTGGACTTTGAATTGGTGCATCCTGCAAAGCATGTTTGATCGAAACTTTTGTGTCAGAAGGGATTTTGTATCAAATCCAAGGA CATTAAAGAAAAGGCTTATGATAGTTGGGCTTGCTATGCTTTTACTTTCTCCATTTCTTGTCATATTCATGCTGGTATATCTCTTTCTGACACATGCTGA ACAGTTTTATAATCACCCAAGCACAGCATCATCTCGAAGATGGTCAAACTTGTCAAGGTGGATCTTTAGGGAGTTCAACGAGGTATTTTGTAGCTCATTT ATTCTTGCATGGGTTTCATGTTAGCATGTTCAAATTATCACCATGCATGAAAGTTGTGAAGTTATGAACAGTTATTAACAAATATGTTAGCTTTGCCTTT GGCTAGCAAGGTGTTAGAGATAGATTGCAACATGACACGTGGGCTCATGCAGACTTTTCTACTTAAGTGTGCCAGCCCAAGTTATACAATTCCATCTGAC TCCAATCAATGTGGGCCTTATTACGATATGCTCACTTGTCCTTGCATATATTTTGAATCTGGTCTTTAATTCTTTATGAAACGTTAATGAATGAAATTAA GCGTCAGTCTTCATTTTAGTTGTTTAACTCAGGTTATTTGAAGAAACCTCTAGATTACGAAGTGCAGAGCTATAAATTTTATATGGTATTTTGAAAATTG TGTTGTAAATGGCTCACTTGTACCTTGATGATAAAGGCGTCACTTGTTTGAATGTGATATTAACTATTAATAGGTCAAAAGTGCTAACACCTATTTATCA TTTTTAGCATAAGTCACTTGTATATTTTTTCCTTTGGTGCTTAAACTTACCATTAACTTGTGCTATAGGTGGACCATCTCTTCAAACATCGGATTAATAG CAGTGTATTATATGCTTCTGATTATCTCAAGCAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_189457; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_473055
| Blastp | Autophagy-related protein 9 from Arabidopsis with 78.93% of identity |
|---|---|
| Blastx | Autophagy-related protein 9 from Arabidopsis with 78.93% of identity |
| Eggnog | Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE) |
| Kegg | Link to kegg annotations (AT2G31260) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019433827.1) |
| Pfam | Autophagy protein Apg9 (PF04109.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |