Ll_transcript_473059

• Id Trinity: TRINITY_DN52025_c3_g1_i23
• Name Transcript: Ll_transcript_473059
• Sequence: ATTGCATGGAAATGTTGGGAATATTTTTTATGGGTTCACTCCAACATTGTGATAATGTGATATTAGGTCTTGTTCACTCCACCATATCTGTATAGGTATT GCTATTTTTGTGTTTTATTTTACTCTTGGTTGGGATGGTAAATTGGAACAATTGCATTAGTTGCAGCATAAAGCTACAAATTTTGTGCCCCTTGTTCAAT CTTAGGAGTATGAAATATTACCTTTTTTATAGGACAAGGGTGAAACCCCGTATTAAAAATGTGTATATAAGAAGGAATAAAAGGGTTGGGTAGTTTTCTG TTATGAGCAGTTAGTTAGTTGGAGGAAAATCTATAAATAGAAGGTGTGTTGTAATAGGAGGCAGTTTTTGTAAAGTGAGGGAAAGGAGGGTAATTTACTG ATTTGGGAATCAACAAACCCTAGGCATCTATTCCAATTGGTGTAATGTCCCAATTGAATTCTATATCAATAATAAGAACAATTCAAGATCACATTGATCT TGAATCATCACTTTTCTTCCACCAATCTTCTACTTTCTATTTCTAAAATTATCAGTTCTAACACCTTTACTATCCATTTTTGTGCTGCCTTCGGAAGATA CTAATCTTGATTCATTCTGTCGCATTTGTAGAACCTTGTCACAATCGTTTAGGTAATTTGGGGCATGGACTTGCTGTTTATGCCCCTGTCAGTGTCTGTG AACAATGTTTAGCAGACCGAGAGATTCAAGTGCTTTCAGTATATTCAAATGGAAACGTCAGAATGAATCATCAGTCACTACAGGTTTACTTCAGGATGAT CCGTCCGAGATTGAATTGTCTGATTATAGAAGGACCCCGAGTCCAGGTAGTGAGAGCCCTTCAGGGCTTCTTAATGGTGAAAGCCTAAATGCAGAACCAA TTGCTGACTTGGATCTCTTCTTTGAAAGGCTTTACAGCTACTACTGTGAGAAAGGACTTTGGTGCATCATTATAAAGTGGATCGTTGAACTTTCGAGTCT AGTGTTCACCATATGTTTTTCGGGATTCTTTTTATTATATGTTGATTGGAATGGCCTTCGTAATGCAAAGTGTGGGATGGGTGCAGTTGAGTATGGAATC AAGCCCTGTGATCTTGCTAAAGAAGCTCTTCATCAACACCCTTTGACTCCATTAACACCTAAGAAAGTTATTATTGTCGGATACTTGGGAATATTTTCCA TCTATTGGATATTTTGCTTCTTGAGATTTTTCGCTCAACTAAAGTGTACTCTGGGAATCCGGCAGTTTTACTACAATAGTCTCCATGTTACCGACAATGA AATTCAAACCATGCCCTGGGCTACAGTTATTGAAAAAGTTGTCCAGATGCAAAGCTCGCAACAACTATGTGTGGTAAAGGATCTTTCTGCTCATGACATG GTGTTGAGGTTGATGCGGAAAGAAAACTACTTGATTGGAATGATCAACAAGGGTGTGCTTGCGTTCCCCATTTCTCAGTGGGTCCCAGGTGTTGGACCTA CTGTGAAATCTGGTCCTAATGGAACACAATATCGTCTAATACTAACCAAGACCCTTGAGTGGACTTTGAATTGGTGCATCCTGCAAAGCATGTTTGATCG AAACTTCTGTGTCAGAATGGATTTTGTATCAAATCCAAGGACATTGAAGAAAAGGCTTATGGTAGTTGGGCTTGCAATGCTTTTACTCTCTCCATTTATA GTCATATTCATGCTGGTATATCTCTTTCTGAGGCATGCTGAACAGTTTTATAATCACCCAAGCACAGCATCCTCTCGAAGATGGTCAAATTTGTCAAGGT GGATCTTTAGGGAGTTCAACGAGGTGGACCATCTCTTCAAGCATCGGATTAATAGCAGTGAATTACATGCTTCTGATTATCTCAAGCAATTTCCTTCACC TATCATATCTATCACTGCAAAATTCATCTCCTTCATGTCGGGTGGTTTTGCTGCAGTTCTGATCATCATTGCTTTTCTTGAGGAGTCTCTGCTAGAGGGT CACGTAATGGTTTTTCCATCGCTTTTCTGAATATAAGTTTTACAAACACGTAATGGAAGTCATTAGTAATAATTTTTCTTCCTTTATTAATCAAAAAACT AATGCAGATATTTGGTCGGAACCTGCTGTGGTATGCTGCTGTTTTTGGAACTATAACAGCAATTAGCCGGGCTGCTATCACAGATGAGATTCTCGTGTTA GACCCTGAAAGAGCAATGTCTATGGTAGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGAAAAGAAAGTACTGTAAATGTCCGAATGGAGTTTG AAACCTTATTCCAAGTATTATGATCAGCTTTTTCTCTGATACGTCTACATTAAGCTAGACCCACCCATATGTGCTATTTGTTGTCTACACGATATATCGT GTTTGGCTTATATATAATAGGTTTGAAACTAGGAATGCTACTTATTCTTCTATGTGTTTTAATGGTGCAGTATACTGGGATGATGTTACTTGAGGAGATG TCATCAATTTTCCTTACTCCATACTTACTTCTATTTGTTGTCCCGAAGCGGGTTGAAGATATCTTGCAGTTCATTGCAGATTTTACTGTGAATGTTGAAG GTGTAGGTCATATTTGCAGCTTTAGCAACTTTGATTTTCAAGAGCATGGAAACAGTAATTATGGCTCCCCGCACAATGCTCCTCACAGCCGGAGGAGTTC CTGGGGGAAGTTTGAGAAGTCGTTTTTGAGCTTTCAGAGCAGTTATCCTTCATGGGAATCAAATGCTCAAGGTAAACAATTTTTGCAAAATCTGAGAACC TTCAGAGAGCAAAAGTTACCGGGACATGTAAACAGATATTCATATTCCCCTCCTAGGATGTGGAAAGGTAGTCCCAATATGGAAAGCAATGAAGACAGAA AAAGGTTTATATCTCGGGAAATGTCACATCATACTTTCGAAACTGGCAATCACTTGGGTTCCTTGTGGCTAATTGAAGCCAATCAAAACAATCACCCCTA TCTTCTCGATTGGTACTATACTTCCCGATCTCACGATGTGACTTCCAGAGAGGTTCCAATTCCGAATGATCCATTTGATGTTAATGATTGTCATTCTGGA GTTTGGATGCGCTCAAACTTGACAGAGAATGAACCTGGGTATGATGAATACTTGAACGAGTATCATGATGATAATCGAGCTGCTTCTTATCTCGGAGCTT CCATATCAGCTCCCATCTTCAGGGAAAGTTTAATTCAGGATCAAAGTTCCAATGATCAGCCCCACACTACCAGGAGCCATTGGTGGGCTAGAAGTCACCA CCAGGATGAACCGGGTCAAACAAGCTTCTTCGAGCCTCCAGATTTCAATCAGCAAACAACAGCATATAATAACTACTATGATAAATTTTCTGATAGAGGA GGCTCAGAGGGTCATCATGATCAGGAACAATTGTATAGGAGAGATGAGCACGATTTATCTAGAACAGCATTCACAAATGACTTAGAAGCTGGAGAATTCT ATCTTCATTTTGATGATATTTATAGCAGCAGGCCTCCACAAAATCCCACTGTAAATTCAAGCACTACAAGCTTTTGAATGATGCCTTTGTCCTACATAAT TGCAAGAGTTTCATAGTGATGATTGCCCCTTCTATTCCATGGAAAGGGGAATTTGATTCTTTGTTGTAAATAGACTCATTGACTGTGATTAGATTGTTGA TGAGCCTCAGTTTGTTGTTTAAGAACCAAATGTTTCTTCTGCTAAAAATCATTCATGGCATGCAGTTTTCTAATTCTTCACCTACTTTTTTTGTACTTCA TTTTTTTAAGGGTTCAATTTAG
• Tissue: pods
• Gene name: LI_gene_189457;
• Additional information: details;

Expression of Ll_transcript_473059

FPKM

• PAB: 0.1
• PNAB: 0.1
• PS1: 0
• PS2: 0
• PS3: 0
• PW1: 0
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_473059

• Blastp: Autophagy-related protein 9 from Arabidopsis with 79.54% of identity
• Blastx: Autophagy-related protein 9 from Arabidopsis with 79.54% of identity
• Eggnog: Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE)
• Kegg: Link to kegg annotations (AT2G31260)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434383.1)
• Pfam: Autophagy protein Apg9 (PF04109.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;