Ll_transcript_473060

• Id Trinity: TRINITY_DN52025_c3_g1_i24
• Name Transcript: Ll_transcript_473060
• Sequence: GAAACAACAGAAATTCTAAGGAAGAAGAAGAAAAGAGGAAACATAGGAAGAATCAGAAACAGAATATAAACCTTAAACCTATTTCATATCAAAATTACGG TTGAATGTTATTTGCTCCTCTTCTTCTGCGCAACCAATAACAACAATAAAAAACGAAGCCCTCATCTTCTCTCTTTGTTATATTCCTTTTGTTCAATCAC TTCCCAACTTGTTTCATCTTCAAATTTATCATCTTTCCCTAATTTCTGTTTCTGGGAACCTTGTCACAATCGTTTAGGTAATTTGGGGCATGGACTTGCT GTTTATGCCCCTGTCAGTGTCTGTGAACAATGTTTAGCAGACCGAGAGATTCAAGTGCTTTCAGTATATTCAAATGGAAACGTCAGAATGAATCATCAGT CACTACAGGTTTACTTCAGGATGATCCGTCCGAGATTGAATTGTCTGATTATAGAAGGACCCCGAGTCCAGGTAGTGAGAGCCCTTCAGGGCTTCTTAAT GGTGAAAGCCTAAATGCAGAACCAATTGCTGACTTGGATCTCTTCTTTGAAAGGCTTTACAGCTACTACTGTGAGAAAGGACTTTGGTGCATCATTATAA AGTGGATCGTTGAACTTTCGAGTCTAGTGTTCACCATATGTTTTTCGGGATTCTTTTTATTATATGTTGATTGGAATGGCCTTCGTAATGCAAAGTGTGG GATGGGTGCAGTTGAGTATGGAATCAAGCCCTGTGATCTTGCTAAAGAAGCTCTTCATCAACACCCTTTGACTCCATTAACACCTAAGAAAGTTATTATT GTCGGATACTTGGGAATATTTTCCATCTATTGGATATTTTGCTTCTTGAGATTTTTCGCTCAACTAAAGTGTACTCTGGGAATCCGGCAGTTTTACTACA ATAGTCTCCATGTTACCGACAATGAAATTCAAACCATGCCCTGGGCTACAGTTATTGAAAAAGTTGTCCAGATGCAAAGCTCGCAACAACTATGTGTGGT AAAGGATCTTTCTGCTCATGACATGGTGTTGAGGTTGATGCGGAAAGAAAACTACTTGATTGGAATGATCAACAAGGGTGTGCTTGCGTTCCCCATTTCT CAGTGGGTCCCAGGTGTTGGACCTACTGTGAAATCTGGTCCTAATGGAACACAATATCGTCTAATACTAACCAAGACCCTTGAGTGGACTTTGAATTGGT GCATCCTGCAAAGCATGTTTGATCGAAACTTCTGTGTCAGAATGGATTTTGTATCAAATCCAAGGACATTGAAGAAAAGGCTTATGGTAGTTGGGCTTGC AATGCTTTTACTCTCTCCATTTATAGTCATATTCATGCTGGTATATCTCTTTCTGAGGCATGCTGAACAGTTTTATAATCACCCAAGCACAGCATCCTCT CGAAGATGGTCAAATTTGTCAAGGTGGATCTTTAGGGAGTTCAACGAGGTGGACCATCTCTTCAAGCATCGGATTAATAGCAGTGAATTACATGCTTCTG ATTATCTCAAGCAATTTCCTTCACCTATCATATCTATCACTGCAAAATTCATCTCCTTCATGTCGGGTGGTTTTGCTGCAGTTCTGATCATCATTGCTTT TCTTGAGGAGTCTCTGCTAGAGGGTCACATATTTGGTCGGAACCTGCTGTGGTATGCTGCTGTTTTTGGAACTATAACAGCAATTAGCCGGGCTGCTATC ACAGATGAGATTCTCGTGTTAGACCCTGAAAGAGCAATGTCTATGGTAGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGAAAAGAAAGTACTG TAAATGTCCGAATGGAGTTTGAAACCTTATTCCAAGTATTATGATCAGCTTTTTCTCTGATACGTCTACATTAAGCTAGACCCACCCATATGTGCTATTT GTTGTCTACACGATATATCGTGTTTGGCTTATATATAATAGGTTTGAAACTAGGAATGCTACTTATTCTTCTATGTGTTTTAATGGTGCAGTATACTGGG ATGATGTTACTTGAGGAGATGTCATCAATTTTCCTTACTCCATACTTACTTCTATTTGTTGTCCCGAAGCGGGTTGAAGATATCTTGCAGTTCATTGCAG ATTTTACTGTGAATGTTGAAGGTGTAGGTCATATTTGCAGCTTTAGCAACTTTGATTTTCAAGAGCATGGAAACAGTAATTATGGCTCCCCGCACAATGC TCCTCACAGCCGGAGGAGTTCCTGGGGGAAGTTTGAGAAGTCGTTTTTGAGCTTTCAGAGCAGTTATCCTTCATGGGAATCAAATGCTCAAGGTAAACAA TTTTTGCAAAATCTGAGAACCTTCAGAGAGCAAAAGTTACCGGGACATGTAAACAGATATTCATATTCCCCTCCTAGGATGTGGAAAGGTAGTCCCAATA TGGAAAGCAATGAAGACAGAAAAAGGTTTATATCTCGGGAAATGTCACATCATACTTTCGAAACTGGCAATCACTTGGGTTCCTTGTGGCTAATTGAAGC CAATCAAAACAATCACCCCTATCTTCTCGATTGGTACTATACTTCCCGATCTCACGATGTGACTTCCAGAGAGGTTCCAATTCCGAATGATCCATTTGAT GTTAATGATTGTCATTCTGGAGTTTGGATGCGCTCAAACTTGACAGAGAATGAACCTGGGTATGATGAATACTTGAACGAGTATCATGATGATAATCGAG CTGCTTCTTATCTCGGAGCTTCCATATCAGCTCCCATCTTCAGGGAAAGTTTAATTCAGGATCAAAGTTCCAATGATCAGCCCCACACTACCAGGAGCCA TTGGTGGGCTAGAAGTCACCACCAGGATGAACCGGGTCAAACAAGCTTCTTCGAGCCTCCAGATTTCAATCAGCAAACAACAGCATATAATAACTACTAT GATAAATTTTCTGATAGAGGAGGCTCAGAGGGTCATCATGATCAGGAACAATTGTATAGGAGAGATGAGCACGATTTATCTAGAACAGCATTCACAAATG ACTTAGAAGCTGGAGAATTCTATCTTCATTTTGATGATATTTATAGCAGCAGGCCTCCACAAAATCCCACTGTAAATTCAAGCACTACAAGCTTTTGAAT GATGCCTTTGTCCTACATAATTGCAAGAGTTTCATAGTGATGATTGCCCCTTCTATTCCATGGAAAGGGGAATTTGATTCTTTGTTGTAAATAGACTCAT TGACTGTGATTAGATTGTTGATGAGCCTCAGTTTGTTGTTTAAGAACCAAATGTTTCTTCTGCTAAAAATCATTCATGGCATGCAGTTTTCTAATTCTTC ACCTACTTTTTTTGTACTTCATTTTTTTAAGGGTTCAATTTAG
• Tissue: pods
• Gene name: LI_gene_189457;
• Additional information: details;

Expression of Ll_transcript_473060

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 0.5
• PS2: 0.2
• PS3: 0
• PW1: 0.1
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_473060

• Blastp: Autophagy-related protein 9 from Arabidopsis with 79.72% of identity
• Blastx: Autophagy-related protein 9 from Arabidopsis with 61.62% of identity
• Eggnog: Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE)
• Kegg: Link to kegg annotations (AT2G31260)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019434383.1)
• Pfam: Autophagy protein Apg9 (PF04109.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;