Ll_transcript_473036

• Id Trinity: TRINITY_DN52025_c3_g1_i5
• Name Transcript: Ll_transcript_473036
• Sequence: TTTTAACTAGAGAACCCAAAAATCTGAAGGAAGAAGAAAGAAAGAAGAAAAGAAGAGTGAGAAAGTGAATAAAAACCTTAAAACATTTTATTATTATATA TATAAATTCTTTGTTACTGCAATTTCCTCTTCCCCCACGCAACAAATAACACCAAAACAAAACCAAAGCCCTCGTCTTTTCTTCTTTCTCATCTCCATTT TATTCGATCAATTTCACAACTTCTCTTATCTCTTCGAATCTCTCACTTTTCCCCAAATTCTCTTTCTGGGTATTCACCAATTCCACGTTTTTTTGATTTA TTTCTTGTCTTCTTCGTAATCATAGAACCTTGGCACAACCATTTATGTCATTTGGGGCATGGACAGGCTATTTATTCCCCTGCCAGTGTCTTTGAACAAT GTTTAGCAGACCAAGAGATCCAAGTGCTTTCAGTATTTTCAAATGGAAACGTCAAGATGAATCATCAGTGACAACAGGTTTACTTCAGGATGTTCTGCCC GAGATTGAGTTGTCTGATTATAGAAGGATCCCAAGTCCAGGTAGTGAGAGTCCTTCAGGGCTTCTTAATGGTGAAAGCCTAAATGCAGAACCGATTCCTG ACTTGGATCTATTCTTTGAAAGGCTTTACAGCTACTACTGTGAGAAAGGACTTTGGTGCATCATTATAAAGTGGATTGTTGAACTTTTGAGTCTAGGGTT CACGATATGTTTTTCAGGATTCTTTTTACTGTATGTTGATTGGAATGGCCTTCGTAATGCAAAGTGTGGGATGAATGCAGTTGAGTCAGGAATTAAGCCT TGTGATCTTGCTAAAGAAGCTCTTCATCAATACCCGTTGACCCCGTTAACACTTAACAAATCTATTATTGTTGGATACTTGGGAATATTTTCCATCTATT GGATATTTTGCTTCTTGAGGTTCTTTGCTCAACTAAAGTATACTCTGGAAATCCGACAGTTTTACTACAATAGTCTCCATGTTACCGACAATGAAATTCA AACCATGCCCTGGGCTACAGTTATTGAAAAAGTTGTTCGGGTGCAAAACTCACAACAACTATGTGTGGTAAAGGATCTTTCTGCTCATGACATGGTGATG AGGTTGATGCGGAAGGAGAACTACTTGATTGGAATGATCAACAAGGGTGTGCTTGCGTTCCCCATTTCTCAGTGGGTCCCAGGTTCTGGTCCTACAGTGA AATCTGGTCCTAATGGAACACAATATCGTCTAATACTAACCAAGACCCTTGAGTGGACTTTGAATTGGTGCATCCTGCAAAGCATGTTTGATCGAAACTT TTGTGTCAGAAGGGATTTTGTATCAAATCCAAGGACATTAAAGAAAAGGCTTATGATAGTTGGGCTTGCTATGCTTTTACTTTCTCCATTTCTTGTCATA TTCATGCTGGTATATCTCTTTCTGACACATGCTGAACAGTTTTATAATCACCCAAGCACAGCATCATCTCGAAGATGGTCAAACTTGTCAAGGTGGATCT TTAGGGAGTTCAACGAGGTGGACCATCTCTTCAAACATCGGATTAATAGCAGTGTATTATATGCTTCTGATTATCTCAAGCAATTTCCTTCACCTATCAT ATCTATCATTGCAAAATTCATCTCCTTTGTATCGGGTGGGTTTGCTGCAGTTCTGATCATCATTGCTTTTCTTGAGGAGTCTCTGCTAGAGGGTCATATA TTTGGTCGGAACTTGTTGTGGTATGCTGCTGTTTTTGGAACTATAACCGCGATTAGCCGGGCTGTAATCAAAGATGAGCTTCTGGTGTTAGACCCCGAAG GAGCAATGTCTATGGTAGTTCAGCATACACATTATATGCCAAAGAGATGGCGTGGCAAAGAAAGTACTGCAAATGTTCGAATTGAATTTGAAACCTTATT CCAGTACACAGGGATGATGTTACTTGAGGAAATGGCATCAATTTTCCTCACTCCATACTTACTTCTGTTTGTTGTCCCAAAGCGGGTTGATGATATCTTG CAGTTCATTGCAGATTTTACTGTGAATGTTGAAGGTGTAGGTCATGTTTGCAGCTTTAGCAGCTTTGATTTTCAAGAGCATGGAAACAGCTATTATGGTT CCCCATTCAATGCTCCTTACAACCGAAGGAGTTCCCAGGGGAAGTTAGAGAAATCGTTTTTGAGCTTTCAGAGTAGTTATCCTACATGGCAGTCAAATGC TCGGGCGAAGCAATTCTTGCTAAATCTGAGAACCTTCAGAGAGCAAAAGCTACCGGGATATGTAAACAGATATGCATATTCCCCATCTAGAATATGGAGA GGTAGTCCCAACATGGGAAACAATGGAGACAGAAACAGGTTCACATCTAGGGAAATGCCGCATGGTACTTTTGAAACTGGCAATGACTTGGATTCATTGT GGCTAATTGAAGCCAGTCAAAACAATCATCCCTATATTCTTGATTGGTATTATACCTCCCGACCTCATGATTTGACTCTCGGAGAGGTTCCAATTCCAAA TGACCCATTTGATGTTACTGAGCATTATCCCAGAGATTGGATGCCCTCAAACTTGATGAAAAATGAACCTGGGTATGCTGAATACTTAAACGAGTATCGC GATGACCGAGCTGCTTCTCATCTTGGGGCTTCCACATCAGCTCCCATCTTCAGGGAAAGCCTTATGGAGGATCACAATTCCAATGATCTACCCCACTCTA TCAAGAGCCATTGGTGGGCAAGAAGTCCCCACCAGCAGGACGTGCCGGGTCAGACAAGCTTCTTTGAGCCTCCAGATTTTCATCAGCAAACAACAGCATA TAATAATAATTATGATAAATTTTCTGATAGAGATTCTGATAGAGGGTCAGAGGGTAATCATGATCAAGAACAACACTTGTACTGGAGAGATCGACACGAT TTATCTAGAACAGCATACACAGATGATTTAGAGTCAGGAGAAATCAATCTTCACTTTGATGATATTTATAGCAGCAGACCTCCAGAAAATCCCACTCTAT ATTCAAGCACTGCAAGCTTTTGAGTGATGGCCCTGTCATTCATTATTTGTTTGGTAGGTTCTTGCTTTCAAGGATCTGGAAGAGTTTCCAAGTGATGATT GCCCCTTCTATATTACTTGCATGGAAACTCGAAATCCGATTTTTTGTTGTATATAAATTCATTGACTTTGATTAGATTGTTAATGATCCTCAGTTTGATG TTTGGAAAGGCCTGACCTTGGGCTGTGTAGAATGGTTGGTTTAAGAACCATTTTTTCTACAATAAATCATTCATTGCATAGTGTTCTAATTCTTCACATC CTTTTTGTAACTGATTTATTGCAACTTTTCAATGCAAATTTCACGAAATGACTTGAAGTTTTCATTGCCAATCATATGGGACTGGAAACTACAGGCGAGG CCAGGTTTCATGAAATGTTATTCAACTTAGAAGATAGTCCAAAGGTTCTTCAACTTTTGCTCTGGTGCTTGACAGTGGTGTAGAATCTAAGGTGCTCATT GAGTTGATGGTTCATGATGGTAGGTGGTGGAACGGTTCGGGGTATGGAGATTTGGTGGTTGCAAAAATTGGCGATGTTGTTGTTGTGGAAGTCACAATAT GGTTAGGTAGGACGATTGTTTTGTTTTCCTATGGTTGGGGAGGTTTGAGGTTGTTTTGGTGGAGGGAAGGAGTGCATATGGTGGTGATGGATGCTTAGCA ACTCTATTTTTCTTAAGTAGGTTGTTCCTTCTAAATAATGAAGCACATGGCTGTCAATGAACCAAACCAACTTGGTATTCATTCGAAATTCGACTCATTA TTTAGCTCGACAAACTTGGTTCATGAACCAAATGAGTTAAACTTGAGCTAGACATTGAACTCGTTAAATAATTGAACCGAATTTGGGCTGGATATAGTTC GACTCGTTAGGTTCATGAGCTAGCTCGATATATATATATGTATATGTATCTGTATGTATATATATGTATATGTATCTATCTATATGTATATGTATATATG TATCTATATATCTATATGTATATGTATATATATAAACTAATTTTTATATTTATTATTACTTATACATT
• Tissue: pods
• Gene name: LI_gene_189457;
• Additional information: details;

Expression of Ll_transcript_473036

FPKM

• PAB: 23.6
• PNAB: 2.6
• PS1: 3.8
• PS2: 3
• PS3: 4.4
• PW1: 3.3
• PW2: 3.3
• PW3: 2.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_473036

• Blastp: Autophagy-related protein 9 from Arabidopsis with 66.52% of identity
• Blastx: Autophagy-related protein 9 from Arabidopsis with 66.52% of identity
• Eggnog: Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE)
• Kegg: Link to kegg annotations (AT2G31260)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019433827.1)
• Pfam: Autophagy protein Apg9 (PF04109.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;