Ll_transcript_473038

• Id Trinity: TRINITY_DN52025_c3_g1_i6
• Name Transcript: Ll_transcript_473038
• Sequence: TTTTAACTAGAGAACCCAAAAATCTGAAGGAAGAAGAAAGAAAGAAGAAAAGAAGAGTGAGAAAGTGAATAAAAACCTTAAAACATTTTATTATTATATA TATAAATTCTTTGTTACTGCAATTTCCTCTTCCCCCACGCAACAAATAACACCAAAACAAAACCAAAGCCCTCGTCTTTTCTTCTTTCTCATCTCCATTT TATTCGATCAATTTCACAACTTCTCTTATCTCTTCGAATCTCTCACTTTTCCCCAAATTCTCTTTCTGGGTATTCACCAATTCCACGTTTTTTTGATTTA TTTCTTGTCTTCTTCGTAATCATAGAACCTTGGCACAACCATTTATGTCATTTGGGGCATGGACAGGCTATTTATTCCCCTGCCAGTGTCTTTGAACAAT GTTTAGCAGACCAAGAGATCCAAGTGCTTTCAGTATTTTCAAATGGAAACGTCAAGATGAATCATCAGTGACAACAGGTTTACTTCAGGATGTTCTGCCC GAGATTGAGTTGTCTGATTATAGAAGGATCCCAAGTCCAGGTAGTGAGAGTCCTTCAGGGCTTCTTAATGGTGAAAGCCTAAATGCAGAACCGATTCCTG ACTTGGATCTATTCTTTGAAAGGCTTTACAGCTACTACTGTGAGAAAGGACTTTGGTGCATCATTATAAAGTGGATTGTTGAACTTTTGAGTCTAGGGTT CACGATATGTTTTTCAGGATTCTTTTTACTGTATGTTGATTGGAATGGCCTTCGTAATGCAAAGTGTGGGATGAATGCAGTTGAGTCAGGAATTAAGCCT TGTGATCTTGCTAAAGAAGCTCTTCATCAATACCCGTTGACCCCGTTAACACTTAACAAATCTATTATTGTTGGATACTTGGGAATATTTTCCATCTATT GGATATTTTGCTTCTTGAGGTTCTTTGCTCAACTAAAGTATACTCTGGAAATCCGACAGTTTTACTACAATAGTCTCCATGTTACCGACAATGAAATTCA AACCATGCCCTGGGCTACAGTTATTGAAAAAGTTGTTCGGGTGCAAAACTCACAACAACTATGTGTGGTAAAGGATCTTTCTGCTCATGACATGGTGATG AGGTTGATGCGGAAGGAGAACTACTTGATTGGAATGATCAACAAGGGTGTGCTTGCGTTCCCCATTTCTCAGTGGGTCCCAGGTTCTGGTCCTACAGTGA AATCTGGTCCTAATGGAACACAATATCGTCTAATACTAACCAAGACCCTTGAGTGGACTTTGAATTGGTGCATCCTGCAAAGCATGTTTGATCGGTATGC TCTACAGATAACCTTTTCATGTACAATCAGTGTATTCAATATCTTTTGAATCTTGTAACTTGTAAATATATGGCCTTTCATAATCTCATGTTTAGCTGTC AAATTTCTTTTCTCAAACTGGTTTAGAAAATGACGTCTTCGTTTGAACGACTCAATGACCATTCATTTACACTAGTCTAGGAAGCCATTTTGGGACTGTT AGGAAGTCTTAGAGGTCTGTTGGACAGGGTAAATATTGAACATTGATTTCAACTATAATAGCAAAAGTGTTTTCCCCACCAGGTGAGTTGGCTACATGGA TCAGATAAAAAAAACTGATGTCTTCTGTCATAAATTAAGTCTTTATAAAGGTCTGTTAGATCCAAGTTCTTTTTAGCAGTTTCATTTAGAGTAGCACTGT TTTTCGGTCTTTCTCTACCTCTAGCTATTGGCATATCCTTCACTCGATAAAGTCTTCTTACCGAGGTTTTTATTAGTCTTCTTTTCACACGGCCTTATGA CCCCAGGCAAGATTCTCTCTGACTTTCCTCAATTGGTGCTACCCCTTTCTTCTCTCTCATACATTTGTTCTAGATCTTGTCTTGTTTTGTGTGTCTACTA GTCCATCGCAACATCCTCATTAGTTTATGCTCTTGTTGGCTTTTTACTGCCTAACAGAAAGTACCATAAAGCACTGCAGGTTTTATTTCATTTAATTGTT TTTTATCTTCTATTTTGTATTTTGTATTTCATTTGAATGCACTATGTGGTGATTTAGTCAAGTAAATTGTGTGATATTATTCATAATACTATATTTGTTC AATGGTGGTTTTCTCCTTTTAACACGGTTTTTCTTTACAGAAACTTTTGTGTCAGAAGGGATTTTGTATCAAATCCAAGGACATTAAAGAAAAGGCTTAT GATAGTTGGGCTTGCTATGCTTTTACTTTCTCCATTTCTTGTCATATTCATGCTGGTATATCTCTTTCTGACACATGCTGAACAGTTTTATAATCACCCA AGCACAGCATCATCTCGAAGATGGTCAAACTTGTCAAGGTGGATCTTTAGGGAGTTCAACGAGGTGGACCATCTCTTCAAACATCGGATTAATAGCAGTG TATTATATGCTTCTGATTATCTCAAGCAATTTCCTTCACCTATCATATCTATCATTGCAAAATTCATCTCCTTTGTATCGGGTGGGTTTGCTGCAGTTCT GATCATCATTGCTTTTCTTGAGGAGTCTCTGCTAGAGGGTCATATATTTGGTCGGAACTTGTTGTGGTATGCTGCTGTTTTTGGAACTATAACCGCGATT AGCCGGGCTGTAATCAAAGATGAGCTTCTGGTGTTAGACCCCGAAGGAGCAATGTCTATGGTAGTTCAGCATACACATTATATGCCAAAGAGATGGCGTG GCAAAGAAAGTACTGCAAATGTTCGAATTGAATTTGAAACCTTATTCCAGTACACAGGGATGATGTTACTTGAGGAAATGGCATCAATTTTCCTCACTCC ATACTTACTTCTGTTTGTTGTCCCAAAGCGGGTTGATGATATCTTGCAGTTCATTGCAGATTTTACTGTGAATGTTGAAGGTGTAGGTCATGTTTGCAGC TTTAGCAGCTTTGATTTTCAAGAGCATGGAAACAGCTATTATGGTTCCCCATTCAATGCTCCTTACAACCGAAGGAGTTCCCAGGGGAAGTTAGAGAAAT CGTTTTTGAGCTTTCAGAGTAGTTATCCTACATGGCAGTCAAATGCTCGGGCGAAGCAATTCTTGCTAAATCTGAGAACCTTCAGAGAGCAAAAGCTACC GGGATATGTAAACAGATATGCATATTCCCCATCTAGAATATGGAGAGGTAGTCCCAACATGGGAAACAATGGAGACAGAAACAGGTTCACATCTAGGGAA ATGCCGCATGGTACTTTTGAAACTGGCAATGACTTGGATTCATTGTGGCTAATTGAAGCCAGTCAAAACAATCATCCCTATATTCTTGATTGGTATTATA CCTCCCGACCTCATGATTTGACTCTCGGAGAGGTTCCAATTCCAAATGACCCATTTGATGTTACTGAGCATTATCCCAGAGATTGGATGCCCTCAAACTT GATGAAAAATGAACCTGGGTATGCTGAATACTTAAACGAGTATCGCGATGACCGAGCTGCTTCTCATCTTGGGGCTTCCACATCAGCTCCCATCTTCAGG GAAAGCCTTATGGAGGATCACAATTCCAATGATCTACCCCACTCTATCAAGAGCCATTGGTGGGCAAGAAGTCCCCACCAGCAGGACGTGCCGGGTCAGA CAAGCTTCTTTGAGCCTCCAGATTTTCATCAGCAAACAACAGCATATAATAATAATTATGATAAATTTTCTGATAGAGATTCTGATAGAGGGTCAGAGGG TAATCATGATCAAGAACAACACTTGTACTGGAGAGATCGACACGATTTATCTAGAACAGCATACACAGATGATTTAGAGTCAGGAGAAATCAATCTTCAC TTTGATGATATTTATAGCAGCAGACCTCCAGAAAATCCCACTCTATATTCAAGCACTGCAAGCTTTTGAGTGATGGCCCTGTCATTCATTATTTGTTTGG TAGGTTCTTGCTTTCAAGGATCTGGAAGAGTTTCCAAGTGATGATTGCCCCTTCTATATTACTTGCATGGAAACTCGAAATCCGATTTTTTGTTGTATAT AAATTCATTGACTTTGATTAGATTGTTAATGATCCTCAGTTTGATGTTTGGAAAGGCCTGACCTTGGGCTGTGTAGAATGGTTGGTTTAAGAACCATTTT TTCTACAATAAATCATTCATTGCATAGTGTTCTAATTCTTCACATCCTTTTTGTAACTGATTTATTGCAACTTTTCAATGCAAATTTCACGAAATGACTT GAAGTTTTCATTGCCAATCATATGGGACTGGAAACTACAGGCGAGGCCAGGTTTCATGAAATGTTATTCAACTTAGAAGATAGTCCAAAGGTTCTTCAAC TTTTGCTCTGGTGCTTGACAGTGGTGTAGAATCTAAGGTGCTCATTGAGTTGATGGTTCATGATGGTAGGTGGTGGAACGGTTCGGGGTATGGAGATTTG GTGGTTGCAAAAATTGGCGATGTTGTTGTTGTGGAAGTCACAATATGGTTAGGTAGGACGATTGTTTTGTTTTCCTATGGTTGGGGAGGTTTGAGGTTGT TTTGGTGGAGGGAAGGAGTGCATATGGTGGTGATGGATGCTTAGCAACTCTATTTTTCTTAAGTAGGTTGTTCCTTCTAAATAATGAAGCACATGGCTGT CAATGAACCAAACCAACTTGGTATTCATTCGAAATTCGACTCATTATTTAGCTCGACAAACTTGGTTCATGAACCAAATGAGTTAAACTTGAGCTAGACA TTGAACTCGTTAAATAATTGAACCGAATTTGGGCTGGATATAGTTCGACTCGTTAGGTTCATGAGCTAGCTCGATATATATATATGTATATGTATCTGTA TGTATATATATGTATATGTATCTATCTATATGTATATGTATATATGTATCTATATATCTATATGTATATGTATATATATAAACTAATTTTTATATTTATT ATTACTTATACATT
• Tissue: pods
• Gene name: LI_gene_189457;
• Additional information: details;

Expression of Ll_transcript_473038

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0
• PS2: 0
• PS3: 0
• PW1: 0.1
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_473038

• Blastp: Autophagy-related protein 9 from Arabidopsis with 60.78% of identity
• Blastx: Autophagy-related protein 9 from Arabidopsis with 61.62% of identity
• Eggnog: Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Cycles between the PAS and the cytoplasmic vesicle pool and may participate in supplying membrane for the growing autophagosome(ENOG410XQBE)
• Kegg: Link to kegg annotations (AT2G31260)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019433827.1)
• Pfam: Autophagy protein Apg9 (PF04109.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;