| Id Trinity | TRINITY_DN52031_c3_g3_i6 |
|---|---|
| Name Transcript | Ll_transcript_472407 |
| Sequence | GAAATTGGGCCTCCAAAAATTGAAACCAAATTGGTTCTCCTTCTTTTATTTTCTCGACAATCGAAAAATTTCAATAGAAATTGAATTTCCCATAACTCAC TCTGCAAAACAATCATGGAACCCTTGTCTTCATCATCATCTTCTGCAATAGCACAACAAACATGGGAACTTGAAAACAACATCATCCCAATGGAATCTCC TTCTTCAACCACCAACGCCGACGACTCCATCTTCCACTACGACGAAGCCGCTCAGAGCGAGTTCCATCGCGAGAAGCCTTGGATCAACGATCCTCACTAC TTCAAACGCGTTAAGATCTCCGCACTCGCGCTCCTCAAGATGGTTGTTCACGCGCGTTCTGGCGGAACCATTGAGGTCATGGGTTTGATGCAAGGGAAGA CCGATAAGGATGCGATCATTGTTATGGACGCTTTTGCCCTTCCCGTTGAGGGTACTGAGACACGTGTTAATGCCCAAGCTGATGCTTATGAATACATGGT TGATTATTCACAGACTAATAAACAGGCTGGGCGGTTGGAAAATGTTGTGGGATGGTATCATTCACATCCTGGTTATGGATGCTGGCTTTCTGGTATAGAT GTGTCTACCCAGATGCTGAACCAACAGTTTCAGGAGCCCTTTCTGGCTGTTGTGATCGACCCTACCAGGACTGTTTCTGCTGGAAAGGTTGAGATCGGGG CATTTAGGACCTACCCTGATGGTTATAAGCCTCCGGACGAGCCCATTTCTGAGTACCAAACCATACCTCTCAACAAAATTGAAGACTTTGGTGTCCACTG TAAACAGTATTATTCTTTGGACATCACGTACTTCAAGTCTTCCCTTGACTCACACCTGTTGGATCTGTTGTGGAACAAATATTGGGTGAATACGCTATCA TCTTCTCCTCTGTTGGGTAATGGAGACTATGTTGCTGGGCAAATCTCGGATTTAGCTGAAAAGCTAGAACAAGCAGAGAATCAGTTGGCGCACTCACGCT TTGGATCATTAATATCTCCTGCTCCTAGAAAGAAAGAAGTAAGCAACTTTTGCTTTAATCTCCACAGTCGTGTCCTTTCATTTTTTTGGAATTTTTGTTT GAGGGTTTCATTTGGATTCTTGGAGTATATTATCTTGTGCAAGTGAAGTCAAACACAGCCTAAATTTGTATATTCAGAATCTTTCTGAGTGTTTTTCTAA AGGTAAACCATTACCCATGATTAGGAGATCACATTATGCTTTCTAGTTCATCAGTGATTGGCATCCCTGGTTATTCTGTTCTTTTTATGCCAGCATTATG AGATGGGAGTGAGTAGAGGGCTGTATTGCATCTACACTACCTCTATTTTGCAACCTAATATGGGACTGAGAGTGAGTCTGGATTTATAGCAAAAAAAGCT CAGCCTGACAGTGTTAGTAGACTTTGCAGAATCCTGCCAGCAACATTTACCTTGTGCAAAATAAGAGTGAAACTCAGTTGACTTCTTTTTTGGAGGAGGA GCTTATAACTGGAATACGTGTAACTAGTTTCTAGATTCATGAATGCTCTGTCTGCATCTTGGACACTGGCCAACTCGGCTGGGAAAATTGCTTGCTACTG TCCATTGTCAATCAAATTCATGACATAAGAGATTAGGACCTGGATGTTGGACACATGGATGCTCACCTGTTGTCAATCAGACGAATTCCTGCTGGTTTTA TTTGTAATATTAGTCTATCCATGTCTTCTTAGATTTGCTTAGTCAGTTTACCTGTACAAGTTCACAGACTGATGTGTTCATCCCTCACCATTATATCTGT ATCATATTTGTTTCTTTTTGGTGATATTGTTTCCTTTGGAAAAAATTGTCAGAGAAAAGCAGTGTGTATACTCACTCACATAGGACACACAAAATGGCAT GAAGTTTATCTTGGGTTTACTTAGTCCATGCTTGTGAGTCCTGATATTCTTTGCCTACACCTACATATCACTTCTACATTTCCATGATAGGCACATAAAT AAAGATCCTTCTTATATGGGGACAATCGTCTGCGATGTGCATAAAAATTTGATGGACCTTCATTCATGATGACGGGGTACTATGCTGATTGCATATAATC TAGAATCATGCATATCAACTAATTTGGTGATATCTTTTCATTACCAGCTGTGAGCCATGAATATCAATGTTAATATCCTCAACCCAGTCCCCCCACAATC TTTCCTCCTCCTTTGGAATCTAATGCTGACATCTCGTCAATTCGCAGGAAGAATCTCCACTTGCTAAGATTACTCGTGATAGTGCGAAAATAACCGCCGA GCAAGTGCATGGTCTGATGTCTCAGGTAATCAAGGACATCCTGTTCAATTCTGTTCATTAAACAAACAAGTCTCGCACAGAAACATCTGACCCTGAACCA ATGATTGAGAGCTGATCTTGGCATAAACTAGACATGCATTTATATGAGTTCATTTTTCTTTTTGGCAATGTCGTCATCCTCGGCTGGCTGCATTACATTT AACAGGTTGACAGTAAATCTAGTTTTGAAGTTTGCCCTGCTGTATATCCTTGTTTTACAAGAACATGTGTGCACTGCCAACCAGGCAATCCACATAAGAA ACTCATTCATCTAACACAATTGAGCTGCTGGTCAATGCAAAAGTTATTGTGCACTTGTCCATTGTTTTGCAGTGCTTGTTGACTTTTCAGTTTATTTACT TGCAGTTTATGTTTGGTGAATGTGACCCCACCTATAAATTGAGCAAATATGGGTGTATTCACAATTAGATCATTCATGGGTTTAATTCTTAATGCATTTT ATCATATGATGGTGAATTCACGAAAGAAGGGTGTTGGTTCAAGTGGTACATGTTTGATTCCCCTTAAGCAAGGTCTCGGGTTCGATCCGTGATGAAAAAA ATGTCCGTTGGGA BLAST |
| Tissue | pods |
| Gene name | LI_gene_189508; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_472407
| Blastp | COP9 signalosome complex subunit 5b from Arabidopsis with 84.05% of identity |
|---|---|
| Blastx | COP9 signalosome complex subunit 5b from Arabidopsis with 83.89% of identity |
| Eggnog | Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity)(COG1310) |
| Kegg | Link to kegg annotations (AT1G71230) |
| CantataDB | Link to cantataDB annotations (CNT0000267) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019416761.1) |
| Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease (PF01398.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |