Id Trinity | TRINITY_DN52053_c0_g1_i15 |
---|---|
Name Transcript | Ll_transcript_473732 |
Sequence | GGAAAGGTTTTAATAAGATTGATCGAAAGGGTTCCATGGAGTGCGGGAGAAAAAGAGAAAGAGTAAGAGGAAGAGTGAGTGAGAACCACAAACATGGCTA TTTTGAAGGAGCTTGTAAGTTTTACGCTTCCACAACCACAAAACCTCACTCTCCTCCATTCCCGCAATACCAACAATACTCATTTCCCTTCACATTTTTT TTCCAATTCCATGCAAATGCTACCTATTCTGCCAATTTTCATTCAATTTCTCCAAACCATTGGTGCTGTTGTCTTGTGATTTTTATTCAGCTAACTGAAT ATGGGCATTCCGGAAAACATAGTTGTCGGTTCCCATGTTTGGGTTGGAGATCCAGAATTAGTTTGGATTGATGGACAAGTACTGAGTATTAATGGAGATG AAGCTGATATTCAAGCTAGCAATGGGAAGAAGGTTGTTTCCCATTTATCAAAATTACATCCCAAGGACACGGAGGCTCCTACTGATGGAGTTGATGACAT GACCAAGCTTGCATATTTGCATGAGCCAGGGGTGCTGCATAATTTGGAAATTAGATACAAGATGAATGAAATATATACGTACACTGGAAATATTCTTATT GCTATCAATCCATTCCAAAGTCTTCCTGACCTGTATGATGCAAATATGATGAAACACTACAAGGGAGCAACATTGGGAGATTTAAGCCCACATGTTTTTG CTATTGCTGAAGCAGCATATAGGGCAATGATTACCGACGAGAAAAGTAATTCTATTCTGGTCAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACTAA AATGCTTATGTGTTATCTAGCATATTTGGGTGGTCGCGTTGCATCTGAAGGAAGGACTGTTGAACAACAAGTTCTTGAATCAAACCCAGTTCTTGAAGCA TTTGGTAATGCAAAAACTGTTAGAAATAACAATTCCAGCCGTTTCGGAAAATTTGTTGAGATTCAATTTGATAAATATGGACGAATATCTGGTGCAGCCA TTAGAACTTATCTGCTAGAGAAATCTCGAGTTTGCCAAATATCAGATCCCGAGCGTAACTATCACTGTTTTTACCTTCTTTGTGCTTCTCCCCCCGAGGA AAAGGAGAAATATAAGTTAGGAGATCCTAGAGCATTTCACTACCTAAATCAATCCAGTTGCTATGAATTAGCTGGTGTTAATGCTGCTCAAGAATATCTT AGCACCAAGAGAGCCATGGATATTGTGGGAATCAGTCAGGAAGAGCAGGATGCAATTTTCAGAGTTGTAGCTGCTATTCTTCATATCGGAAACATTAAGT TTGCAAAATCAGAAGAAACAGATTCATCGGTTCTTGAAGATGAAGAGTCCAAGTTCCATCTCCAAACAACAGCAGAACTTCTAATGTGTGACCCTAATGC TTTGGAAGATGCACTTCGTAAGCGTGTGATGATTACCCCAGAAGAAATTATCATGAGAAGTCTCGATCCTGTTGGTGCTACAGTTAGTAGAGACGGTTTA GCAAAGACACTATATTCTCGTTTATTTGACTGGTAATATGCTTTTGTCATGTGCAAATATGAAATTAGAAGAAAAAAAAGGATGTGCAGTGTTTGTTAAG GTCTAAATGTTTTCTTATTTCACTAAAATAGAGTAAAGGAATACATCAATTACAGTTATGTATTTTTTGTTATGTCCAGGTTAGTCTATAAAATTAATGT CTCCATTGGGCAGGATCCTAGCTCAAAATTTCTCATTGGCGTTCTTGACATATACGGTTTTGAAAGTTTTGTTTCTAATAGTTTTGAGCAGTTTTGTATT AATTTCACAAATGAAAAGCTGCAGCAACACTTCAACCAGGTATGAGCATGTGTTTAAGATGGAGCAAGAACAATATACAAAAGAAGGGATTAACTGGAGC TACTTAGAATTTGTAGATAATCAAGATGTACTGGATCTTATTGAAAAGAAACCGGGTGGAATCATTGCTCTGCTTGATGAAGCTTGTATGTTTCCAAAAT CAACTCATGAAACATTTTCGCAAAAGCTTTATCAGACGTTCAAAGATCACAAGCGCTTCGTCAAGCCAAAATTGGCACGCTCGGACTTCACAGTTGTTCA TTATGCAGGGGAGGTCCAGTATCGGTCTGAGCTGTTTTTAGACAAAAATAAAGACTATGTTGTTCCTGAACATCAAGACATGCTAAGTGCTTCCAGATGT TCATTTGTATCAGGCCTTTTCCTCCCACTTTCTGAGGAGACAGCCAAATCTGCCAAGTTTTCTTCTATTGGTTCTCGTTTTAAGCTACAATTACAACAAT TGATGGAAACTCTCAATCTGACAGAACCCCACTATATTAGGTGTGTGAAGCCAAATAATCTATTACAACCTGGAATATTTGAGAATGTGAATGTCATCCA ACAATTACGTTCTGGTGGTGTTCTTGAAGCAGTACGAATTAAATGTGCTGGATTTCCCACTCATAGGACTTTTCATGATTTTTTAACTCGAGTAGGAATT CTTGCTCCGGAGGTCCTTCTAGGGAAGTAAGTATAATATAATGCCTTTATGCCATTGTTTTCTATTTACTTGGTTTTCCATCTTCAATCATCTGCATCTA TGCAGCTTCAATGAAAAAGATTCTTGTAAAATGATTTTGGAGAAGATTGGCCTATCAGGTTATCAGATAGGGGAAACACAAATATTCCTAAGAGCTGGTC AGATGGCTGAGTTGGATGCACAGAGAGCACGCCTGCTTAACAATTCTGCAACAGTTATCCAGAAGCAGATTAAAACTCATTTTAGTAGGAAAACTTATGT TGCATTGCGGAAATCCTCTATTTTTATCACATGAAGTAGCGCATCAATGGTTTGGAAATCTGGTAACTATGGAATGGTGGACTCATTTATGGCTCAATGA AGGTTTTGCAACATGGATAAGTTATATGGCCACTGATATCTTATTTCCGGAGTGGAATATTTGGACTCAGTTTCTTCAACAAGCTTCCGAAGGTTTACAT ATGGATGCACTTGAAAAATCACATCCGATCGAGGTAGAAATACATCATGCACGCTCAGTTATTGAAGTCTTCGATGCTATTAGCTATGACAAAGGATGTA CTGTAATTAGAATGTTACAGGGCTATCTTGGGGATGTTGTGTTTCAGAAATCGTTAAGCACGTATATAAAAAGATATGAAGCCCGAAATGCAAGGACAGA AGATCTATGGGATGTTCTTTCGGAGGTATCAAGTCTGCCGATCAACACAATGATGAACAGATGGACAAAACAAACAGGATATCCAGTTATTTATGTTGAG TTAAAAGATCATACTTTGGTAATCAAACAGGTATTGTGGAGTCGAAAACTCGAAATCGAAACTAGCATATGCGCCACTTAGTTATATATAACTTTTTTAC TTTCACATTGAACATAACTGCTATTAGAAACTGTCTGATGTAACATTTAAGTTTGCAGTCACAGTTCCTTTTATCCGGTCTGCATGCTGATGGAAAATGG ATTGTCCCGATAACCTTGTCTGTCGGTTCGTACGAAAGAAATAGAAAAATTCTTTTGGAGACCAGTGATTTAAGGGTGGATATATCTGATCTGGTTCAAT CTATTAATGTTAATTTAAGCTCAATTAAAACAAAAGATGAGGTGGATGTTCAAGAAAATCTATGGATCAAAGTCAATGTTGACCAGAGTGGTTTTTATAG GGTGAACTATGAAGACAAACTTGCAGTTCTATTGAGGAAAGCCATACAAAACAATTGCTTGCTGCCCACGGATAAATTCGGCATTTTGGATGATGGAAAT GCTCTTTGTCAGGCTTGTGAACAATCACTTGCATCTTTGCTTATGTTGATAGATGTTTACAGAAAAGAGTTTGATTATATTATTGTATCAAAACTGATTG AGGTGAGTACAATTTCTCTATTCTACTATTTCTAAAAAAATAGCATTTATTCATAGGAATATGTTTCCTGAATTCATTTATACTTCAGGTTTGTAAAAAT GTTCTGAATGTCTCCATTGATGCAATACCAGATTCAATAAATGAGTTGAAGCAATATTTTATCAACATTCTCTTGTATTCTGCTGAGTAAGGAATAAACT TTACAATTTTATTATGGCCTTGAACTTCTTCTCTCACAATAATGCACCTGAATGGTTTTTCTTCTCCCTTGATTGAATATTTACATTGGAAATTCTGTAA GGTTTAGTGCATATAGATGCTTTGTGGCAGTAAAGTTTCTGCATTTATTGAATCAATATTAATCTACAAATATGGCAAATATTTGCATGTTGTTTCATAG TAACATTATTATCTCATTTACTCTACGTACCGCATACTGAATTCACGACGCCATGTATCATGTATCATATTCGTGTAGAGAGGTCTCATAAAATTAATAT AAAATGTAATGAACTGCGCCCAGGTGAACTACATGTACCGCGTCTCATGTAACTATGCGATGTGTGTTGTTCTACACCCAACATGATACAAAGTATTCAA TCATTTTACAAAATCAATATCTTGTAAGAACATTTGTGTGCTCATGCTGGAAAATGACATGCTAGCTTACTGATTGTGTAGACAGTTAGGTTGGGACTCT ATAT BLAST |
Tissue | pods |
Gene name | LI_gene_189670; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_473732
Blastp | Myosin-11 from Arabidopsis with 75.85% of identity |
---|---|
Blastx | Myosin-11 from Arabidopsis with 69.65% of identity |
Eggnog | myosin heavy chain(COG5022) |
Kegg | Link to kegg annotations (AT1G54560) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019453131.1) |
Pfam | Myosin N-terminal SH3-like domain (PF02736.18) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |