| Id Trinity | TRINITY_DN52058_c6_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_473584 |
| Sequence | ATCATTTCGGTGTATGTATCTGATATGAAATAAAAGACGACGGAGAAAGAGATCCCCACCAAATTGTCTCTCTCTTACCATGGCGGATTCCGGTTCTTCT CCCGCAACCCTAGAGCCTCCCAATCCTCAACCCGATCCCATTCCTCACTCCTCATCTCCTTCTCCTGCTAACCCTAATCCCGATCCTAATCTCAATCCCA ATCCTAATCCCAATCCCAATCAAGTGTTGCTACCGCCGCCTCCGCTGCGCCCTACCCTATCATTCACGCCTGCGCCACCGCCATCCTTCAGGCCTCTTCA TCCGCAGCCTCCTCACTTCTCTCCTTTGCCCAATATCACTTATCACACTCCTCCTGTTCAACCTCCTGGCGTAACTTCTACATCTTCCATGCCAATGCCG ATGCAGCCCATCCTCTCCTATCACCTTCCTCCCGGCCAGCCGATGAGACCCTACGCCGTCCCCATGCCGAACGGTTACGCGCCAGCGCCTCCGCAAGGGA CCATGCCTCCTGCCGAAGTCGCCCATGTTTGCAACTGAGTGCACGTTGGCCTTGAGTCCTAAGGTATTGCAATCTTTTCAATTCTCATTTTTCTCTACCT CAGTTTTTTTCCCTTTTTAATGCTGCAAAACCGGGCTGCTATTCCTATTTAAAAGAAACATAGAAATAACTAGTTTCTTATTAAACCAAGCATGCATGAG ATGAAGAAATTCTTGTGTTACGTATTTTCATTTGGTTGATGGGGTAGTTTGAGAAGCCTGCTACTGCTATTTGCAAGTGGTCAAATAAAGGTAAGATTTT TTACATGACCAGAAATTTCAAACTCGGTGGTATTTTTTAATGTTTTCTTCAGGTTGTCATTTCAGCTGGTGATTGTTGGCTCTGCTGCCATCTCTATTAT GCTTTTGATGTGTGGTAACAGCATTCCATTGTTCTTGTTGCATTTTATTTACATGTATCTTCAGTGTTGTATGGATTAGTTTACTATGTATATTCACTTA TAACCTGTTCTAATATATTTGCATAGCTATTTTTCTGCATCTTTACAGGAATTCCTCGTTATCCTCCTCCATATGGTATGGTTCGCCCTCTATATCCTCC ACGTGCACCTGGATCAGTCAATGTTCTTCCTGTACCACGCCTACCTGTTGCTGGGGTCCCTGCAGTTCGCCCTGTTATTCCTCCTGTCATTAGACCTGTC ATTGTTCCTAGTGTCACTCCAGCTGAGAAGCCACAAATCACAGTTTACATTGGCAAGATTGCACCAACTGTGGAAAATGATTTTATGCTCAATCTCTTTC AGTTATGTGGACCAGTCAAGAGCTGGAAACGCCCTCAGGATTTATCAAATGGAACTCCTAAAGGCTTTGGGTTTTGTGAATTTGAGTCTGATGAAGGGGT TCTTCGTGCCTTGCGTCTGCTCACTAAATTGAGCATTGATGGGCAAGAGTTAACGCTCAATGTCAATTCAACTATGAAAGAATATCTGAAGCAGTATGTT GAGAAAAAAGCTGAGAACTCAAAGAAAAATGAAACTCAGGCAGTAGGAGCTGAAAACGATGATGGAAGTGCACAACCTCCTGATGCAAATGGGGATGGGA AACCTGATGCAGAGCACTCAAAGAAAGAGGATAATGATTCAGGTAACAAGGAATCCCATGATTTGGCAACCTTTGGTATCATCACCGCTGATGATAGGGA AGCTGATAAAGAGGCTATAGAAAAGATTACGAATATGATAGAGGAGAGGTTGAAAACCAGACCTTTGCCTATAGCTCCTGCGCAGGCAGCAGGTGATGGC TCTGCAATAATTTCGGAACAACCAGCTAAAACAAGAGATGGAGACACCGGTGTGGATATGGGGGGTAAAGAAACAACTGAAGATAAAATTGAGAAAGATA CAAACAATGACAGCAAACCAACTAGTGATCATGATAAGGCTGAGAGCCCTGATAGAAGGCATGACAGGAGAAGCAGGGAGAGAGACCGAGATAGAGATCT AAAACGAGAAAAGGAAAGGGAACTCGACAGATATGAAAGAGAGGCAGAGAGGGAGCGTATTAGAAAAGAGAGGGAACTAAGAAGAAGGATTGATGAGGCT GAGCGGAAGTATGAAGCATGTTTGAAGGAGTGGGAATATAGAGAAAGAGAAAAAGAAAAAGAACGCCAGTATGAAAAGGAGAAAGAGAAAGAAAGGGAAC GCAAACGGAGAAAGGATATACTTTATGATGAAGAAGATGAGGATGATGCTTCAAGGAAGAGATGGCGTAGAAGTGCACTAGAGGAAAGGAGAAAGAAGAG GCTGCGGGAAAAGGAAGATGACCTTGTTGACAAACTAAAAGAAGAGCAAGAAATAGCTGAAGCCAAGAAGAGGGCTGAAGACGATCATCAACAGAAACAG CAGAGAGATGCATTGAAGATATTATCTGACCATGTGATAAATGGTGGTGAAAAAGTTATGGCCTTTGAAGTGATTACTAATGAAGCCAAAATTATTGCTT CTGAACAAGATACTGTAGCTGATTATAGTGGAGAAGGTCATATAGGTGATGTGAATTCTCTTAATGGCATCAATGATGAATCAGCCATGGCACCCGTTTC TGAAACTGATGTGCCATCGGGTGGGAATGCTCCTTCGAAAAAGTTGGGATTTGGTTTAGTTGGGTCTGGAAAAAGAACAAATGTTCCTTCTGTTTTCCAT GAGGAAGAGGATGACGATGCACACAAGAACAAAAAATTGAGGCCTTTAGTTCCAATTGATTACTCAACTGAGGAGCTCCAGGCTGTTCAACCCACTGCTT CTGGGCCGACACCACCAAATTTAGCTGCAGCTGCAGAATTCGCGAAACGTATATCCAGTGCCAGTCTCAAGGAAGAGAAGCTGGATGGAGAACGAGGTAG AAGTAGGCGCTCGAATGAGAGGTCTGCTAAACGAGACAGGGACAAGAGTGATGAAGATGGCACTCACGATAGAGATGAAAGCCGAGAGAAAATTCCTGAC CGTGACAGAGATCGAGATCATGGGTCAGATAAACTCAAGACTTCAGGTAACAAGAGGCTCTTGGATGCAAAACAGTTAATTGATATGATACCAAAGACCA AGATGGAGTTGTTCTCGTATGAGATAAACTGGGCCGTGTATGACAAGGTATGTGATTCTTGTCTGTCTGATTTTTACATGTGCAATTATTTGCTCCCGAT TCAGAAGAGATTTGCCTATATCTTTTCCATTTGGGTTGAACATAAGGTGCTAGTAAGTTGGATGATGGGCATAGCTTTATCTGTTTCCTGTTATAATATA TCTAGAGTATTCTTTTATCTTTCAATCTGGAGTGCACTGTTTTTGTACCCCACAGAATAACAATGTTGGGAATCTTTTAAATGATGTGGAGAACAACACC ATTAAATTCCTTGACAGTTGATTTCTTGTTTGTTTGTTAGGATTGAAAATTTAAAAAATGGCCTTGTAAGTTGTTTACTGTTTTTTTGGGGGAGAAATTG TTAGTTAGGCATGGTCTGACTCCCCCCTATCATATCCATATGTTAAGCTATCAAATCATTGTTTAAGAAGAAATTTTTGAAGATAGGTTTATTCCTAACA TGGCTTCCACGACCTTAAACATGTCAAGTTATGATTATGGTACTTAGAGTTACTAATTGATCTTCTGTTTAAATATTGCATGAAAATTTTATGCTTTAAG GCTTTTCTCTCAATTACTGCATCTGTCGTACTTATTTAACTTGGAGGGCTCTTGTATGCCAATTGTTTTGTATTTAAGTAGCTTTTGCTTAAAGGTTCTT GGTGATTTAGATTTGTGTATTTTGGAGTAATTTTTTCTAAATTGTTGGTTTTATATCCCCATTTTGTGTGTTGTTCAGAATCAGCTGCATGAAAGAATGA GACCATGGATTTCGAAGAAAATCCAAGAGTTTTTAGGGGAAGAAGAGAATACATTGATAGATTATATTGTTTCGAGTACACAAGAACATGTGAAAGCATC TCAGATGCTAGAACGCCTTCAGATGATTTTAGATGAAGAAGCTGAGATGTTTGTTCTGAAGATGTGGAGGATGCTTATATTTGAAATAAAGAAGGTAGAA ACAGGGCTTGCTTTGAGGTCCAAATAATGGGTTTGTATTTGCAGGATGGAGATTTTTCATGGTTACTGTCTTCACCTGAAAGTGTAAATTGAGAGCAAAA TCATAAAGTCATATCAGTTTGTATTTGCTTTAAGACTCAATTTGGTGTCTCCAAAACCCCTTTTTCCTTTGGCATAAGAATTAGTAGTTGGAGATTTTGT TTGGTGGTTATAGTCTTCATTTACTTTGTTGAGTTATTACAGTTAGAGGCAGACTTGGTCTTCATATTCATGTGGGATTCAGTAATCCATTAACAATTCT GGATTCTCATTTAGGAAATTTCCTTTACAAAATATTTTTGATTTGATTTTAAGTGACTTAAACAGATTGCTCACTCAATCTTAAACATAAGTAATCAGAC TTTGTAACATACTCCCTGAATTTGAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_189711; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_473584
| Blastp | RNA-binding protein 25 from Mus with 33.54% of identity |
|---|---|
| Blastx | RNA-binding protein 25 from Mus with 48% of identity |
| Eggnog | RNA binding motif protein 25(ENOG410ZRGA) |
| Kegg | Link to kegg annotations (67039) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019439187.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |