| Id Trinity | TRINITY_DN52061_c0_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_472113 |
| Sequence | CACAATTTCGTTCTTTATTCTCAATTCTCAAAACCCTAACCAATTACCTTCTCAACCCCTTCCTCTCTCTATCTCATTACATAGGTTTTAGTCAATGACC ATTTGATGAATGATGATAGTAGAAAAGGATAAAATGTCTGCTCCTTCGTCACGAGAGCGTGCACAACGCCTTTATGAGAAGAACCTCGAATTGGAGAATA AGCGTCGGAGATCTGCTCTCCCTTCAGATCCAAATGCTTGGTCGCAGATACGTGATAATTATGAAGCAATAATTCTTGAGGATCATGCTTTTTCTGAGAA ACACAATATTGAGTATGCTCTATGGCAGTTACATTATAAAAGGATCGAGGAATTGAGGGCACACTTAAATGCCGCTCTTACTTCTATAAGCTCAAAATCA TCTCAGGGAGGGAAAGGTCAGGTGAGACCTGATCGGGTAACTAAAATAAGGCTGCAGTTTAAGACTTTCCTTTCAGAAGCCACTGGATTCTATATTGATC TTATTATGAAAATCAGAGCCAAGTATGGGCTTCCTCTTGGTTACTTTGAGGATTCAGAGAATCAGATTGTGATGGAGAAAGATGGAAAGAAATCTGCCGA AATGAAGAAAGGTGTAATATCTTGTCATCGTTGTCTGATATACTTGGGTGATCTTGCTCGTTACAAAGGATTGTATGGGAAAGGTGAATCGATAAAGCGT GAGTTTGCAGCAGCTTCTAGTTATTATTTACAAGCTGCATCTCTTTGGCCTTCAAGTGGGAATCCCCATCATCAGCTCGCCTTATTGGCTTCATATTCTG GGGACGAAGTAGGAACAATTTATCGCTACTTTCGAAGTCTGGCTGTGGATAGTCCCTTTACAACCGCCAGAGATAATTTGATAGTTGCATTTGAGAAGAA TCGTCAAAATTACTCTCAGCTCTGTGGTGATGTTAAAGCTCTTGCAGCCAAGGAATCTTCTGGGCATTTAACTGGCAAAGGAAGAGGAAAAGTGGAAGCA AAACTTGCAACAGGGGGTACTGGTGTGGAAGCCTGTCCTAAAAAGGAAGGAGTATCCAACATACAAGAGGCTTACAAATCCTTCTGTACCTGTTTTGTCC GTCTAAATGGAATATTATTTACTCGTACAAGCCTTGAGACCTTCAGCGAAGTTCTCTCTCTTGTTAGCACTGGCCTCCACAAGCTTCTGTCTTCAGGGCA AAATGAAGAGCTGAATTTTGGAATGGATACTGTTGAGAATGGACTTGCTATTGTCAGAATTGTTTCCATTACCATATTTACAGTTCACAGTGTGAATAAG GAATCTGAAAGTCAAACTTATGCAGAAATTGTGCAGCGTGCCGTTCTACTTCAGAATGCATTCACTGCAGCTTTTGAATTGATGAGTTTCATAGTCGAGA GGTGTATTCAGCTGCAGGATCCTTCTTCTAGTTATCTATTACCTGGTATTTTGGTTTTCGTAGAGTGGTTGGCATGTTATCCAGATTTTGCTGCTGGCAA CAATGTAGATGAAAAGCAGGCAATTGTTAGATCAAAATTTTGGGTTCATTGTATATCCTTCTTGAATAAGCTACTTTCAGTTGGGCCTATGTCTATTGAA GACGATGAAGATGAGGCCTGCTTTAATAATATGAGCAGGTATGAAGAAGGGGAAACTGAAAATCGGGTTGCTTTATGGGAGGACATTGAGTTACGTGGAT TTGTTCCCCTTCTTCCTGCACAAACCATCTTGGATTTTTCAAGGAACCATTCCCTTGGAAGTGGTGGTGAAAAGGAAAGAAAAGCTCGTGTCAAAAGGAT TTTAGCTGCAGGGAAGGTTCTAGCAAACGTAGTTAGAATTGATCAGAAAATGATATATTTTAACTCGAAAGGAAAGAATTTTACAATTGGTGTTGAGCCT CAAGTCTCGGATGATTTTGTTCTTGCTCCCTATTCAGCCATACCTGATGCAGAAGAGTTGTTGAAAGAAAATACAGCAGACAAAACCAAGGTGGGAATTG CTCAGCCAGACCAACAGGATGATGATGAGGTTATTGTTTTTAAACCTATTGTAGCTGAGAAACGAGCTGACGCGATGGTTGTCTCATCACGGGTACCCTA TGAAGGCTTCGAGTCAGTATCAACAGCCTTTGGTGGTGATATGAAATTTCATATTAATTCGGCTTCTAACTCTCTCAACAATGTGAACCATCAAACTTCT TTGCCTCCTTCTGTTAGTAGTATGTTACCTCAACACCTGCCTTCAGTTCAGCCACATTCTTTGAGGTGGTTAGAGGAGGAAATAACCCTTCCTAATAGTT TGAAGAGTCTCAGATTCTCGGAGAATGGGCATGCAGTGCAATCTGACTTGCCACTACAAGCTGTATCAATCTCCAATCATACTGCACTTCCAGTTCCTAC CCATCAACCTGTAAGTGCTGGTACTAATATGCTTCGTGGTCTCTCAAAAGCTGAAGACTTTGTGATATCATCCAAAGTTGATGCTATCATACCATCTGGA TTTTTTACTGATAATTCTGTTATAAAGACATCATCAGCGTTGCAAGCTAGTTTGAAAAAATCTCCAGTAAGCCGACCTTCCAGGCACCTTGGACCTCCTC CTGGTTTCAGCCTTGTTCCTCCTAGACAAGATATTGAACCAACTGTTTCAGATTTGATTAGCAGGAATCCAATTATGGATGATTACAGTTGGTTGGATGG ATATCAGCTTCCTCCACCAACAAAAGGTCTGGGACCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_189726; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_472113
| Blastp | Protein SMG7 from Arabidopsis with 53.87% of identity |
|---|---|
| Blastx | Protein SMG7 from Arabidopsis with 53.87% of identity |
| Eggnog | homolog, nonsense mediated mRNA decay factor (C. elegans)(ENOG410XR9Z) |
| Kegg | Link to kegg annotations (AT5G19400) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019455933.1) |
| Pfam | Telomerase activating protein Est1 (PF10374.8) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |