Ll_transcript_472117

• Id Trinity: TRINITY_DN52061_c0_g1_i15
• Name Transcript: Ll_transcript_472117
• Sequence: CACAATTTCGTTCTTTATTCTCAATTCTCAAAACCCTAACCAATTACCTTCTCAACCCCTTCCTCTCTCTATCTCATTACATAGGTTTTAGTCAATGACC ATTTGATGAATGATGATAGTAGAAAAGGATAAAATGTCTGCTCCTTCGTCACGAGAGCGTGCACAACGCCTTTATGAGAAGAACCTCGAATTGGAGAATA AGCGTCGGAGATCTGCTCAGGCACAGGTCCCATCAGATCCAAATGCTTGGTCGCAAGTGCGTGAGAACTATGAAGCAATAATTCTTGAGGATCTTGCTTT TTCCGAGCAGCACAGTATTGAGTATGCTCTTTGGCAGTTACATTATAAGAGGATCGAGGAATTGAGGGCATACTTACATGCTGCTCTCACTTCTGCAAGC TCCAAATCATCTCAGGGAGGGAAAGTTCCTGTGAGACCTGATCGGATAACTAAAATAAAGCTGCAATTTAAGACATTCCTCTCAGAAGCAACTGGATTCT ACCATGGTCTTATTATGAAAATCAGAGCTAAGTATGGGCTTCCTATTGGTTACTTTGAGGATTCGGAGAATCGGATTGTGACGGAGAAAGATGGAAAGAA ATCTGCTGAAATGAAGAAAGGTTTGATATCTTGTCATCGTTGTCTGATATACTTGGGTGATCTCGCTCGCTACAAAGGATTGTATGGGAAAGGCGATTCG ATAAAACGTGAGTTTGCAGCAGCTTCTAGCTACTATTTACAAGCTGCATCTCTTTGGCCTTCAAATGGAAATCCCCATCACCAGCTTGCCTTATTGGCTT CTTATTCTGGGGACGAATTGGGAACAATCTATCGTTACTTTCGAAGTCTGGCTGTGGATAATCCATTTACAACTGCCAGAGATAATTTAATAGTTGCATT TGAGAAGAATCGTCAAAGTTACTCCCAGCTCTGTGGTGATGTTAAAGCTCTTGCTGCCAGGGAATCTTCTGGTCAATTAACCAGCAAAGAAAGGGGAAAA GTGGAAGCAAAATTTGCAACAGGGGGTACTGGTGTGGAAGCCTGTCCTGGAAAGGAAGGAGCATCCGACATACAAGAGACTTTCAAATCCTTCTGTACCC GTTTTGTCCGTTTAAATGGAATCTTATTCACTCGTACAAGCCTTGAGACCTTCAGCGAAGTTCTGTCTGTTGTTAGCAATGGCATCCGTAAGCTTCTGTC TTCAGGGCATGATGAAGAGCTGAATTTTGGAACGGATACTCTTGAGAATGAACTTGCCATTGTTAAACTGGTTTCCATTACCATATTTACAGTTCATAGT GTGAATAAGGAATCTGAAAGTCAAACTTATGCAGAAATTGTGCAGCGTGCCGTTCTACTTCAGAATGCATTCACTGCTGCTTTTGAGTTGATGGGTTTCA TAATCGAGAGGTGTGTTCAGCTGCAGGATCCTTCTTCTAGTTATCTATTACCTGGTATTTTGGTTTTCGTAGAGTGGTTGGCATGTTATCCAGATTTTGC TGCTGGCAACAATGTAGATGAAAAGCAGGCAATTGTTAGATCAAAATTTTGGGTTCATTGTATATCCTTTTTGAATAAGCTACTCTCAGTCGGGCCTACA TCTATTGAAAGTGATGTAGATGAGACTTGCTTTAATAATATGAGCAGGTATGAAGAAGGGGAAACTGAAAACCGGCTTGCTTTATTGGAGGACATCGAGT TACGTGGATTTGTTCCTCTTCTTCCTGCACAAATCATCTTGGATTTTTCAAGGAAGCATTCCCTTGGAAGTGGTGGTGAAAAGGAAAGAAAAGCTCGGGT CAAAAGGGTTATAGCTGCAGGAAAGGCTCTAGCAAATGTTGTTAGGATCGATCAGAAAATGATTTATTTTGATTCGAAGGGAAAGAAATTTACGGTTGGT GTTGAGCCTCAAGTCTCTGATGATTTTGTTCTTGCCTCCTATTCAGACATACCTAATGCAGAGGAGCTGAAAGAAAATACAGCAGACATGAGTAAGGTGG GAATTGTTCAGCCAGACCAACACCAGCTTATCGAAGGAGAGGATGATGATGAGGTTATTGTTTTTAAACCTACCGTAGCCGAGAAACGAGTTGATATGGT TGCTGTCTCATCATGGGCACCCTATGAAAGCTTGGAGTCGGTACCAACAGCCTCTGGAGGGGATATGAAATTTCATACTAATTCTGCTTCTAACTCTCTC AACAATGTGAACCGACAAACTCCTTTGCCTCCTGTTAGTGGTATAATGCCACAACACCTGCAATCAGATCAGCCACATTCTTTGAGGTGGTTAGAGGAGG AGAACACTCTTGCTAACAGTTTGAGAAGTCTAAGATTCTACGAGAATGGGCAGGTAATGAAACCTGACCTGCCACTACAAGAAGTTGTAGCAATCTCGAA CTATACTGCACGTCCTGTTCCTACCCAGCAGCAACCTGTAAGTGCTGGTACTGGTGTGCTTCACGGTCTCTCAAAGGCTGAAGACTTTGTGATATCATCC AAAGTTGATGCTATAATACCATCTGGGGTTATTGCTGATAATTCTGTTGTGAAGACGTCATCAGCGTTGCAAGTTGGTTTAAAAAAATCTCCAGTGAGCC GACCTTCTAGGCACCTTGGACCTCCTCCTGGCTTCGGTCGTGTTTCTCCTAAACAAGATACTGAACCCAGTGTTTCAGATTTGATTAACACGAATCCAAT TATGGATGGTTACAGTTGGTTAGATGGATATCAGTTGCCTTCAACCAATGGTTTGGTCCCCAATGGTTCTCTTGCTTACCCCAATGGTTCTCTTGCTTAC CCCAATGGTTCTCTTGCTCATCCCAATGGTTCCCTTGTTCACCCCAATGGTTCTCTTGCTCACCCCAATGGTTCTATTGCTCACCCCAATGGTTCTCTTG CTAACCCCAATGGGTCACTTGTTCACCCCAATGGCTCTCTTGCTCACCCCAATGGCTCTCTTGCTCACCCCAAT
• Tissue: pods
• Gene name: LI_gene_189726;
• Additional information: details;

Expression of Ll_transcript_472117

FPKM

• PAB: 3.9
• PNAB: 5.7
• PS1: 9.4
• PS2: 6.6
• PS3: 8.6
• PW1: 6.8
• PW2: 6.5
• PW3: 7.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_472117

• Blastp: Protein SMG7 from Arabidopsis with 54.8% of identity
• Blastx: Protein SMG7 from Arabidopsis with 54.8% of identity
• Eggnog: homolog, nonsense mediated mRNA decay factor (C. elegans)(ENOG410XR9Z)
• Kegg: Link to kegg annotations (AT5G19400)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019460913.1)
• Pfam: Telomerase activating protein Est1 (PF10374.8)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;