| Id Trinity | TRINITY_DN52061_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_472107 |
| Sequence | CCTTCTTCTAGTTATCTTTTACCAGGCATTTTGGTTTTTGTTGAATGGTTGGCATGTCATCCAGATTTTGCTGCTGGCAATGACATGGACGAGAATCAGG CAACTGTTAGATCAAAATTTTGGGTCCATTGTATATCCTTCTTGAATAAGCTACTTTCAGTTGGGCCTACCTCGAATGAGGACAATGAAGATGAGGCTTG CTTTAATAGTATGAGCTGGTATGATGAAGAAGAAACTGAAAACCGGCTTGCTTTATGGGAGGACATTGAGTTACGTGGATTTGTTCCCCTTCTTCCTGCA CAAACCATTTTGGATTTTTCAAGGAAGCATTTCCTTGGAAGTGGTGGTGAAAAGGAAATAAAAGCTCGGGTCAAAAGGGTTATAGCTGCTGGAAAAGCTC TAGTAAATGTTGTTAGGATTGATCAGAAAAAGATATATTTTGACTCGAAGACAAAGAAATTTACAATTGGTGTTGAGAAGCCTCAAGTCTCAGATGAATT TGTTTTTGCCTCCTATTCAGGCATACCTGACACAGAAGAGTTGTTGAAAGAAAATACAGCAGAGAAGACGGAGGTGGGAATTGTCCAGCCAGACAAACAC CAGCATATGGAAGAAGAGGATGATGATGAGGTTATTGTTTTTAAACCTGTTGTAGCCGCGAAACGATCTGATGCAGTGGTTGTCTCATCATGGGCACCCT ATGAAGGCTTGGAGTCAGTACCAACAGCCTCTGGAGGGGATTTGAAATTTCATATTAACTCCGCCTCCAACTCTCTCAACAATGTGCACCATCAAACTTT TTTGCCTCCTGTTAATGGCATGCTGCCTCAACACCTGCAATCAGTTCAGCCACATTCTTTGAGGTGGTTAGAGGAGGAAACCTCTCTAGCTAAAAGCTTG AAAGGTCTCAGATTCTCCGATAATGGGCACGTAATGACACCTGACTGGCCACTACAAGAAGCTGTATCAATCTCCAACTATACTGCACTTCCAGTTCCGA TCCAGCAACCTGGTACCAATGTGCTTCATGGTCTCTCCAAAGCTGAAGACTTTGTGATGTCATCCAAAGTTGATGCTGTCATACCATCTGGGGTTATTGG TGATAATTCTGTTAAGATGTCATCAGCGTTGCAAGTTGGTTTAAAAAAATCTCCAGTGAGCCGACCTTCTAGGTACCTTGGACCTCCTCCTGGTTTCAGT TGTGTTCCTCTTAAACAAGATATTGAACCCGCTTTTTCAGATTTGATTAGGGCGAATCCAAATATGGATGATTACAGTTGGTTGGATGGGTATCAGCTGC CTTCATCAACCAAAGGTTTAGGCCCCAATGGTTCTCTTGCTTACCCTCAGTCGAATCCTCATCAAGTCATTAACAATGGCTTGAGTGTGACAGACAACTT TCCCTTTCCTGGAAAAAATGTTACATCCACACTCCAGATGGAGAAACAGAATGGTTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_189726; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_472107
| Blastp | Protein SMG7 from Arabidopsis with 52.9% of identity |
|---|---|
| Blastx | Protein SMG7 from Arabidopsis with 52.9% of identity |
| Eggnog | homolog, nonsense mediated mRNA decay factor (C. elegans)(ENOG410XR9Z) |
| Kegg | Link to kegg annotations (AT5G19400) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019434772.1) |
| Pfam | Est1 DNA/RNA binding domain (PF10373.8) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |