Ll_transcript_472109

• Id Trinity: TRINITY_DN52061_c0_g1_i7
• Name Transcript: Ll_transcript_472109
• Sequence: TAACAACACAAATAAACAAACATCATTCATTCATTCACGTCTTTTTCTTTCTCTCTCTCTCTCTCTCATCCCAAACCCTAACCCAACCACCTTCTTAATC CCTTCGATACCGTGTTTCGCTCTCGATCTCATTACGTAGGTTTTAGTCAATGAACATTTGATGGATGGTGATAGTAGAGAAGGATAACATGTCTGCTCCT TCACCACGGGAGCGTGCGCAACGCCTTTATGAGAAGAACCTTGAATTGGAGAATAAGCGTCGGAGATCTGCTCAGGCGCAGGTCCCATCAGATCCAAATG CATGGTCACAGATGCGTGAGAATTATGAAGCAATAATTCTTGAGGATCATGCCTTTTCTGAGCAGCACAATATTGAGTATGCTCTATGGCAGTTACATTA TAAGAGGATTGAGGAATTGAGGGCATTCTTAAATACTGCTCTTACTTCTGTGAACTCAAAATCATCTCAGGGAGGGAAAGCTCCCGTAAGACCTGATCGG ATAACTAAAATAAGGCTTCAGTTTAAGACTTTCCTTTCAGAGGCAACTGGATTTTACCATGATCTCATTATGAAAATCAGATCCAAGTATGGACTTCCTC TTGGTTACTTCGAGGATTCGGAGAGTCGGATTGTGATGGAGAAAGATGGAAAGAAATCTGCGGATATGAAGAAAGGTTTAATATCTTGTCACCGTTGTCT GATATACTTGGGTGATCTCGCTCGCTACAAGGGACTGTATGGGAAAGGTGACTCAGTAAAGCGTGAGTTTGCAGCAGCTTCAAGTTACTATTTACAAGCT GCATCCCTTTGGCCTTCAAGTGGGAATCCCCATCATCAGCTTGCTTTATTGGCTTCATATTCTGGAGACGAATTGGGAACAATTTATCGTTATTTTCGAA GCCTCGCTGTGGATAGTCCATTTACAACTGCTAGAGATAATTTGATAGTTGCATTTGAGAAGGTAATGCGAAAATGAAATTGATTTTGAAATTCTCAACA ACTTTCTTATTCACAAGTCTTAATTATTTTTTAAACATGTAGTTCTTCTCTGTTTCTTATGTGTTATTCAACCTTGTTTTTTTATTGCTTGCAAACTGAT GTACAATTGTGATCCTCAAAAAAGTTAAAGGCTTTAAAAGTTTGTACGCTGTGAACTTCCGATGGCCGCATTAATTTATGTTATGTGGGCATGTGTGAGG TGGATTTACTTAATGTATTATAATTGGTAATTATATTTGATTTATTGAAAGAATGTGACACATCATCCTTCTAGTGTAAAACTGTAAAGTTGGGCTCTTA TTTTGGCATTGAATCTGTTGGGGATGAAGAATTGCCCTTGAGCTTGGTTCTCTGTTTCTTTTCTTGCTGCTGTGTGCGGTGTTGATATTGGAAATACTTG TTGTTTTCATAACTAGCTGTTTTTATAATACCATTACAGAATCGTCAAAGTTACTCTCAGCTATGTGGTGATGTTAAAGCTCTTGCAGCCAGAGAATCAA CTGGCCAATTAACCAACAAAGGAAGAGGAAAAGAGGAAGCGAAACTTGCAACAAGGAGTACTGGTGTGGAAGCCTGTCCTAGAAAGGATGGAGCATCCAA CATACAAGAGAGTTTGAAATCCTTTTGTACCCGTTTTGTCCGTCTAAACGGAATCTTATTCACTCGTACAAGCATTGAGACCATCAGTGAAGTTCTCTCT CTTGTTAGCACTAGCCTCCGTGAGCTTCTATCTTCAGGGCAAGATGAAGAGCTGAATTTTGGAATGGATACACTTGAGAATGGACTTGCCATTGTCAGAA TTGTCTCCATAATCATATTTACAGTTCATAGTGTGAATAAGGAATCTGAAAGTCAAACTTATGCAGAAATTGTGCAGCGTGCCGTTCTACTTCAGAATGC ATTCACTGCTGCTTTTGAGTTGATGGGTTTCATAATCGAGAGGTGTGTTCAGCTGCAGGATCCTTCTTCTAGTTATCTATTACCTGGTATTTTGGTTTTC GTAGAGTGGTTGGCATGTTATCCAGATTTTGCTGCTGGCAACAATGTAGATGAAAAGCAGGCAATTGTTAGATCAAAATTTTGGGTTCATTGTATATCCT TTTTGAATAAGCTACTCTCAGTCGGGCCTACATCTATTGAAAGTGATGTAGATGAGACTTGCTTTAATAATATGAGCAGGTATGAAGAAGGGGAAACTGA AAACCGGCTTGCTTTATTGGAGGACATCGAGTTACGTGGATTTGTTCCTCTTCTTCCTGCACAAATCATCTTGGATTTTTCAAGGAAGCATTCCCTTGGA AGTGGTGGTGAAAAGGAAAGAAAAGCTCGGGTCAAAAGGGTTATAGCTGCAGGAAAGGCTCTAGCAAATGTTGTTAGGATCGATCAGAAAATGATTTATT TTGATTCGAAGGGAAAGAAATTTACGGTTGGTGTTGAGCCTCAAGTCTCTGATGATTTTGTTCTTGCCTCCTATTCAGACATACCTAATGCAGAGGAGCT GAAAGAAAATACAGCAGACATGAGTAAGGTGGGAATTGTTCAGCCAGACCAACACCAGCTTATCGAAGGAGAGGATGATGATGAGGTTATTGTTTTTAAA CCTACCGTAGCCGAGAAACGAGTTGATATGGTTGCTGTCTCATCATGGGCACCCTATGAAAGCTTGGAGTCGGTACCAACAGCCTCTGGAGGGGATATGA AATTTCATACTAATTCTGCTTCTAACTCTCTCAACAATGTGAACCGACAAACTCCTTTGCCTCCTGTTAGTGGTATAATGCCACAACACCTGCAATCAGA TCAGCCACATTCTTTGAGGTGGTTAGAGGAGGAGAACACTCTTGCTAACAGTTTGAGAAGTCTAAGATTCTACGAGAATGGGCAGGTAATGAAACCTGAC CTGCCACTACAAGAAGTTGTAGCAATCTCGAACTATACTGCACGTCCTGTTCCTACCCAGCAGCAACCTGTAAGTGCTGGTACTGGTGTGCTTCACGGTC TCTCAAAGGCTGAAGACTTTGTGATATCATCCAAAGTTGATGCTATAATACCATCTGGGGTTATTGCTGATAATTCTGTTGTGAAGACGTCATCAGCGTT GCAAGTTGGTTTAAAAAAATCTCCAGTGAGCCGACCTTCTAGGCACCTTGGACCTCCTCCTGGCTTCGGTCGTGTTTCTCCTAAACAAGATACTGAACCC AGTGTTTCAGATTTGATTAACACGAATCCAATTATGGATGGTTACAGTTGGTTAGATGGATATCAGTTGCCTTCAACCAATGGTTTGGTCCCCAATGGTT CTCTTGCTTACCCCAATGGTTCTCTTGCTTACCCCAATGGTTCTCTTGCTCATCCCAATGGTTCCCTTGTTCACCCCAATGGTTCTCTTGCTCACCCCAA TGGTTCTCTTGCTAACCCCAATGGGTCACTTGTTCACCCCAATGGCTCTCTTGCTC
• Tissue: pods
• Gene name: LI_gene_189726;
• Additional information: details;

Expression of Ll_transcript_472109

FPKM

• PAB: 0.5
• PNAB: 0
• PS1: 0.3
• PS2: 0.8
• PS3: 0.8
• PW1: 0
• PW2: 0.4
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_472109

• Blastp: Protein SMG7 from Arabidopsis with 53.64% of identity
• Blastx: Protein SMG7 from Arabidopsis with 51.77% of identity
• Eggnog: homolog, nonsense mediated mRNA decay factor (C. elegans)(ENOG410XR9Z)
• Kegg: Link to kegg annotations (AT5G19400)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019460915.1)
• Pfam: Est1 DNA/RNA binding domain (PF10373.8)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;