Ll_transcript_472110

• Id Trinity: TRINITY_DN52061_c0_g1_i8
• Name Transcript: Ll_transcript_472110
• Sequence: TTGTTTAATTTTAAAAATATTTTTATAGAAATTGTTGAGGAAATACGTTAATATGTAGTGACCCCAACACAATTCAAAGAATAACAAACATAAATCACGC CCTCTCTATTTTCTTCTTCTTCTTCAATTTCTCTCTCACAACCAAACCCTAACCAATTACCTTCTCCACCCTTTCCTCTATACCGTGATTTCATCTCCAT CTCATTACACAGGATTACTCAATGACCATTTGATGGATGATGATAGTAGAGAAGGATAAAATGTCTGCTCCTTCATCACAGGAGCGTGCACAACGCCTTT ATGAGAAGAACCTCGAATTGGAGAATAAGCGTCGGAGATCTGCTCTCCCTTCAGATCCAAATGCTTGGTCGCAGATACGTGATAATTATGAAGCAATAAT TCTTGAGGATCATGCTTTTTCTGAGAAACACAATATTGAGTATGCTCTATGGCAGTTACATTATAAAAGGATCGAGGAATTGAGGGCACACTTAAATGCC GCTCTTACTTCTATAAGCTCAAAATCATCTCAGGGAGGGAAAGGTCAGGTGAGACCTGATCGGGTAACTAAAATAAGGCTGCAGTTTAAGACTTTCCTTT CAGAAGCCACTGGATTCTATATTGATCTTATTATGAAAATCAGAGCCAAGTATGGGCTTCCTCTTGGTTACTTTGAGGATTCAGAGAATCAGATTGTGAT GGAGAAAGATGGAAAGAAATCTGCCGAAATGAAGAAAGGTGTAATATCTTGTCATCGTTGTCTGATATACTTGGGTGATCTTGCTCGTTACAAAGGATTG TATGGGAAAGGTGAATCGATAAAGCGTGAGTTTGCAGCAGCTTCTAGTTATTATTTACAAGCTGCATCTCTTTGGCCTTCAAGTGGGAATCCCCATCATC AGCTCGCCTTATTGGCTTCATATTCTGGGGACGAAGTAGGAACAATTTATCGCTACTTTCGAAGTCTGGCTGTGGATAGTCCCTTTACAACCGCCAGAGA TAATTTGATAGTTGCATTTGAGAAGAATCGTCAAAATTACTCTCAGCTCTGTGGTGATGTTAAAGCTCTTGCAGCCAAGGAATCTTCTGGGCATTTAACT GGCAAAGGAAGAGGAAAAGTGGAAGCAAAACTTGCAACAGGGGGTACTGGTGTGGAAGCCTGTCCTAAAAAGGAAGGAGTATCCAACATACAAGAGGCTT ACAAATCCTTCTGTACCTGTTTTGTCCGTCTAAATGGAATATTATTTACTCGTACAAGCCTTGAGACCTTCAGCGAAGTTCTCTCTCTTGTTAGCACTGG CCTCCACAAGCTTCTGTCTTCAGGGCAAAATGAAGAGCTGAATTTTGGAATGGATACTGTTGAGAATGGACTTGCTATTGTCAGAATTGTTTCCATTACC ATATTTACAGTTCACAGTGTGAATAAGGAATCTGAAAGTCAAACTTATGCAGAAATTGTGCAGCGTGCCGTTCTACTTCAGAATGCATTCACTGCAGCTT TTGAATTGATGAGTTTCATAGTCGAGAGGTGTATTCAGCTGCAGGATCCTTCTTCTAGTTATCTATTACCTGGTATTTTGGTTTTCGTAGAGTGGTTGGC ATGTTATCCAGATTTTGCTGCTGGCAACAATGTAGATGAAAAGCAGGCAATTGTTAGATCAAAATTTTGGGTTCATTGTATATCCTTCTTGAATAAGCTA CTTTCAGTTGGGCCTATGTCTATTGAAGACGATGAAGATGAGGCCTGCTTTAATAATATGAGCAGGTATGAAGAAGGGGAAACTGAAAATCGGGTTGCTT TATGGGAGGACATTGAGTTACGTGGATTTGTTCCCCTTCTTCCTGCACAAACCATCTTGGATTTTTCAAGGAACCATTCCCTTGGAAGTGGTGGTGAAAA GGAAAGAAAAGCTCGTGTCAAAAGGATTTTAGCTGCAGGGAAGGTTCTAGCAAACGTAGTTAGAATTGATCAGAAAATGATATATTTTAACTCGAAAGGA AAGAATTTTACAATTGGTGTTGAGCCTCAAGTCTCGGATGATTTTGTTCTTGCTCCCTATTCAGCCATACCTGATGCAGAAGAGTTGTTGAAAGAAAATA CAGCAGACAAAACCAAGGTGGGAATTGCTCAGCCAGACCAACAGGATGATGATGAGGTTATTGTTTTTAAACCTATTGTAGCTGAGAAACGAGCTGACGC GATGGTTGTCTCATCACGGGTACCCTATGAAGGCTTCGAGTCAGTATCAACAGCCTTTGGTGGTGATATGAAATTTCATATTAATTCGGCTTCTAACTCT CTCAACAATGTGAACCATCAAACTTCTTTGCCTCCTTCTGTTAGTAGTATGTTACCTCAACACCTGCCTTCAGTTCAGCCACATTCTTTGAGGTGGTTAG AGGAGGAAATAACCCTTCCTAATAGTTTGAAGAGTCTCAGATTCTCGGAGAATGGGCATGCAGTGCAATCTGACTTGCCACTACAAGCTGTATCAATCTC CAATCATACTGCACTTCCAGTTCCTACCCATCAACCTGTAAGTGCTGGTACTAATATGCTTCGTGGTCTCTCAAAAGCTGAAGACTTTGTGATATCATCC AAAGTTGATGCTATCATACCATCTGGATTTTTTACTGATAATTCTGTTATAAAGACATCATCAGCGTTGCAAGCTAGTTTGAAAAAATCTCCAGTAAGCC GACCTTCCAGGCACCTTGGACCTCCTCCTGGTTTCAGCCTTGTTCCTCCTAGACAAGATATTGAACCAACTGTTTCAGATTTGATTAGCAGGAATCCAAT TATGGATGATTACAGTTGGTTGGATGGATATCAGCTTCCTCCACCAACAAAAGGTCTGGGACCC
• Tissue: pods
• Gene name: LI_gene_189726;
• Additional information: details;

Expression of Ll_transcript_472110

FPKM

• PAB: 6.7
• PNAB: 6.2
• PS1: 9
• PS2: 5.5
• PS3: 8
• PW1: 6.8
• PW2: 9.5
• PW3: 7.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_472110

• Blastp: Protein SMG7 from Arabidopsis with 53.87% of identity
• Blastx: Protein SMG7 from Arabidopsis with 53.87% of identity
• Eggnog: homolog, nonsense mediated mRNA decay factor (C. elegans)(ENOG410XR9Z)
• Kegg: Link to kegg annotations (AT5G19400)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019455933.1)
• Pfam: Telomerase activating protein Est1 (PF10374.8)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;