| Id Trinity | TRINITY_DN52067_c0_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_474394 |
| Sequence | CTAAATTCTAATCTAAACTTACTTCCAATTTCACTTTCTCTCTTTCAATCTTCCACTCACCAAAAACCCTACATCTTCAATCGTTGCTTCCAATTCCACA CAATCCCAATTTCATTGAGGGATTGATATTTGAAGACCCTGTTTATGTTTTTGAGGATTCCACTTATGAAAAGGAGAGGCCATGCAACAAGGTGGTTATT GGTTCATGGTGTTGGATTTGGATAATGGATATAACTCTCTCTATATGTTTGTGTTGTGCATATTATTACAGGGGAGGAGAAAGTTTTCGGACCCATTTTG CTTCTTCGAATTCGAAATCACTGCCTGGCTTGCCGAGAAAATGGATCCTGGTCGCTACGGAATGCATCAAGGCTGGGATGATAACAACAGCGCTCCTGAG GGTTATGCTGCGGCCCATGAGCCAAATTTCCGGGTTGGAGGTTCTTATGATGAAAGGAGGTTTATAGATGAAAGATATCCAAGGGATGCTGGATACCGGC GAAATAGTTTCCATCGTGACATTTTGGATAGGGAGGCCTATCTGCCACCAGGACCTGCTGCTGGTCAGTGGACTCAGTCCAAACGGAGAGGTTACGATGA ATATTATCCACCCGACAAGGAATCTAGACGTTTTCAGAGGCCTTATCATGAACCATATAATCAGGTTGATGCTTTCGGGGATCGTGAGATTGACACATAC CCAGAACGTGATAAGTTCCAGGATGGCTATGCCAGCATTGATAACTATGGTGATCGAGGATATGATAAATCTGCCAGGTTTGCAGGGCATGACCGTGATG ATTATGAGTACGATGATTATGGCTACAAATCTCGCCTTTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCGCCATAGTTATGA TTCTGATTATGAAAGAGGTAGTAGAAGAGATAATAATCGGAAGCAGCGTGAATCCCGTGATCGGGAACGTGATAAAAGAGATCTTAGTCGGGAAAAGGAT TTGAGTCCACATAGGAGGCATGAGCGTTCTCGTTCCCGTTCTCGATCTCCATCACGGTCCCAATCCAATTCCCGTTCCCTTTCCCGTTCCCAGTCTCGTG GATATGATTATGATGATCATCCACGATCAAAATCCCCTCGAGGTCGAAGCCATGGCCGAAGTTATCGAGAAGACAGCTATGTTGACAGTAGATATGATAG AAGTGAAAGACATAGGGATCGTGATGACAAACATCAGCGTGAACATTATTCTGTGGCTCCGTCTGCAACTATTGTTGTTAAAGGTCTTTCACAGAAGACG ACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGTCCCCTTCGTCATGTCCGTGTTATAAAGGAGAGAAATTCTGGCATCTCTCGCGGATTTGCAT TTATTGATTTTCCTTATGTGGGAGCTGCACAAGGAATGATGGAAAAACTAGGAGATGATGGTCTTATTGTGGATGGCAGAAAGCTTTTCTTTGAATACAG TAGTAAGCCAACTGGAGGTCCAGGTCAAGATGGAGCTATAAAATCAGGTCATAATCATAAGAGCATTACATTACCATCTGATTGGATATGCACTATATGT GGCTACATCAATTTTGCACGTCGGACTTCCTGCTACCAGTGTAATGATCCACGAACAGAGGATGCTCCTGCAGCAGATATTTCATCATCAAATTCAACTG CCTTAGGAAAGAAAGGTTTGGAGGCAGGTCCGACTCATGTTTTGGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGGGATGCTCCGCTATGAGTTTTC CAAACATGCTCCTATTAAGGATCTGCGTCTTGTCAGGGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACATTTTCATTCGGTGGAGGATGCT ACCAAAGCTCTTGCGGCAACAAATGGAACAACCCTCGAGAGGAATGGACAAATTCTAAGAGTAGCATATGCAAAAAGTATCGTGGGCCCTGGATCAGGAG CTTCCCAATCGAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCAACATTTTCTCAACAGTATGATACTGTGGGATGGGCTCCAAAAGAATATAACCCAGA TGACAAACAATCTGCTGGTCCAGAGCAAACTGGCACAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCT GCTTCTGGGTTTTACTATGATGGGAACACTGGTCTGTATTATGATGGTAATAATGGGATTTGGTATTCATATGACAATCAAACTCAGCAGTACATCCCTT GCACTGACCAAAATCAGAATAAAACAGCTAATAACCTCTCTGAACCATCCAAAGCATCTGATGGTTCCAGCAGTAAAAAGGTGGTGATTTCTGCGACAGC AACTACCGTTGCATCAGTTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGCTGCAGCAGCAGCTGCTTTAGCTGCAGAGAAGAAAGAAAAAGAAAAA TCAAAGGAGATAAAACTTGCCTCAAAAAGCAGTATTCTGGCAAACAAGAAGAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGGC AGACTACTCGAGTGGCTCTTGAAGATAATCAACTCTCTGTTTCAGCTGATGATAAATATTCTTCAGGACATTCTGCAAAGAATAAGTTAAAAAATGAGCC TATAGCAAGGGAAAGTAATGCATCATCTACTTTGGGAATTCACACAAGTGTTACCCAGGCTGTTGCTTTCGATTCTCAGCCTCAGTCCCGGCCAGTTAGT AATAGCCTTGGGGGATCTTTGATGGGGGTTATAAGGGGCTCGGGAAGAGGGGTTGTTAAATCAGATACTTATTCGGGTTCTTCAGCTGTCGCATCATCTA TGTCAGGTTCTTTAGCAAACGTTGTTGCACAGACAACTTCAACTCCCTTTAGAACAGATGTCTCTGCCTTGAGTTCACATACACCATCTGTGGCTTCTAT AAGTGGCAGAAGAAGGTTTTCAGAAATGCCCAGTTCTGCTTCAACTCACAAGGAACAATCTCAAACAACCTACAGGGATCGTGCAGCTGAGAGGAGAAGT TTGTATGGCTCGTCGTCTTCAGTTGGGAATGATATGTCTGACCTTGAAATTGGGGGTTCAAGTAAGTCAAAGTTTTTAATGAGTTCTGTTTCTTTTGTGT TCAACTACTATTGTACAATTGTTGAGGTAATTGTATTTTCTTAACAGTAATTAATTGCTGATCTCTAGACATTCGCCAGTCCCCGATGAAAAGCTCTGGT GGTAGAGGAAGTTAGTTTTATATTAGGACATAGGTGTTAACTAAGACCTTGGTGTATGAGTGAAGAATTGATATTTTGTTTATTTGTCTTTTGTATTATT GAAAGTTAAGTAAATTGCCGGGGCAAGGAAATGAAACCTAATTAGATGTTTGTGTGTATTTCAAAATATAAATAGAACTATGATTTCTATTGACACTTTA TAAATGAGTATCGGGTTTCCAGCTAGTAGAAAGGGATTTACGCCTAGTATTTACCCACCTTTCTCCTAAGACTGAAAGTTACTGTTCACAAATTTTCTTG TAGCAAAGTATAGATGCTAAGTATCAAAGATTACTCTATTTGAAAATTCAAATAACCAAACAGTGAGTTTTGATGCCTCTAGGCCCCCTGGTAAATTTCT ATCTTTGACATGTGGATTGACGTATGAAAAAATTCTTTTACTATGTAACTTTGAAGATCGAGAATTTGCACCGAGGAAGGGGGATCCGATGCCTTTCCCT CCCGGGGTTGGTGGAGGACGTGTGGTTGGAGATGTCAACCTTGATACTTTTGAGGTGATTACGGCTGACAAAGCAATTGATGAAAACAATGTTGGCAACC GGATGCTTCGCAACATGGGATGGCAAGAAGGCTTGGTATCATTTCATTCTCCGTACTAAAGTTTAGCATGTATTTGATTGGTATTTTGAAGTGTCGGCGC TTCGTGTCGGATTCTGACATATGGAAATTGTGGTTGTATGAATAAATTGATGGAATAGGGACTTGGAAAGGATGGAAGTGGAATGGTAGAGCCAGTGAAG GCAGAAGGAATGGAGAAAAGAGCAGGACTTGGGAGTCAGCAGCAGAAGAAGTTGGATCCTAGCCTGGAGGTGCAGGCAGGGGATAGTTACAAGATGCTTA TTCATAAAAAAGCACTTGCCAGATTTAGGGAAATGTAAGATTTTGTTATGCTCTTATTGTACAAGTGCTTTTGCTATTTTCAATTTGAAAATTTGTCAAT TTGTTAATTTATGATCAAATCTGCATATCTTCTTTTGTTGTACTCTGGAGATGTTTTGGAATAATATTGTTCTTGCTCTGTCAATAGTTATCCCTTTGTT TTTTTTGGTATTAGTAAGGGTATGTCTAACCTTTTTGGATAAGGAACTAATCTCTTCCGAGTTTGTGGTCGACCCTTCCAACAAGTATCATTCCCAGGAA TTGAACCTTTGATCTTGGGGATCCAAGAGTCTTACACCATTAGACGAACGTTTTGTTGTCTATGTTTCTATCCTTTTATTATTATTTTGGTGAGTGTGGC CATCAAAAGTCACATTTGGTTTTGGTTTTCTCCTGTTACATATTTCTAAAGGGATTCTTGCTAGAAAGAGATGGCCAAAGGGTTTGACTATTGGGAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_189796; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_474394
| Blastp | SUPPRESSOR OF ABI3-5 from Arabidopsis with 53.4% of identity |
|---|---|
| Blastx | SUPPRESSOR OF ABI3-5 from Arabidopsis with 58.42% of identity |
| Eggnog | RNA binding motif protein(ENOG410YNFQ) |
| Kegg | Link to kegg annotations (AT3G54230) |
| CantataDB | Link to cantataDB annotations (CNT0001316) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423246.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |